similar to: Details regarding the nnet package

I am using the iris example came with nnet package to test AMORE. I can see the outcomes are similar to nnet with adaptative gradient descent. However, when I changed the method in the newff to the batch gradient descent, even by setting the epoch numbers very large, I still found all the iris expected class=2 being classified as class=3. In addition, all those records in the outcomes (y) are the

Dear All, I am recently working on neural network using nnet package. The network has 4 hidden layers and 1 output layer, the target output 1 or 0. The model I use is as follows: nn<-nnet(target~f1+f2+f3+f4+f5+f6+f7+f8+f9+f10,data=train,size=4,linout=FALSE,decay=0.025,maxit=800) It works well and give me ROC 0.85. However, when I want to reproduce the result in java, I cannot get the same

HI, Dear R community, I am using the nnet to fit a neural network model to do classification on binary target variable (0, 1). I am using the following codes: nnet.fit<-nnet(as.factor(out) ~ ., data=train, size=5, rang=0.3, decay=5e-4, maxit=500) I want to know what is the activation function for the original inputs, is it sigmoid activation function? and what is the output activation

Hello, First of all I am french, so please forgive me, if there are some big language mistakes in my sentences. I think, it is the good mail address to send my question, if not please tell me and forgive me. I am working on a project, and I use the nnet library. Our customers do not want us to install R on their machine, so we just use R for making the training of our neurons network. This

Hello, First of all I am french, so please forgive me, if there are some big language mistakes in my sentences. I do not know if it is the good mail address to send my question, if not please tell me and forgive me, I have also sent this quetion to r-help, because the answer could be known from the programmers and the other R users :). I am working on a project, and I use the nnet library.

Hi, I just want to point out a discrepancy between the documentation of predict.nnet & the function definition. >?predict.nnet => predict.nnet package:nnet R Documentation Predict New Examples by a Trained Neural Net Description: Predict new examples by a trained neural net. Usage: predict.nnet(object, x,

Hello, I want to use nnet package in R, to train and simulate a NN and get the value of MSE. I am reading in a file which has 19 input variables and one output variable and has a total of 2000 observations. The first column in the file is a column just for giving the serial numbers of the observations. I have already read in the file and also extracted the different values into the matrices to

Dear All, After followed the help of nnet, I could get the networks trained and, excitedly, get the prediction for other samples. It is a two classes data set, I used "N" and "P" to label the two. My question is, how do I get the predicted numerical value for each sample? Not just give me the label(either "N" or "P")? Thanks! FYI: The nnet example I

Dear All, I'm learning to train a neural network with my training data by using nnet package, then evaluate it with a evaluation set. My problem here is that, I need the trained network to be used in future, so, what should I store? and How? Any other options other than nnet package? Any example will be highly appreciated! Best, Baoqiang Cao

Hi, I’m having mayor issues with predict from the nnet package. I’m training a neural network for forecasting. I trained the network with info from 1995 to 2009 and I want to forecast month by month 2010.(the network forecasts one month at a time). Since I have to do iterative forecasting, im using predict several times including, including the new forecast each time, but for some reason

Dear R people, I am using tune.nnet from e1071 package to tune the parameters for nnet. I am using the following syntax: tuneclass <-c(rep(1,46),rep(2,15)) tunennet <-tune.nnet(x=traindata,y=tuneclass,size=c(50,75,100),decay=c(0,0.005,0.010),MaxNWts = 20000) Here traindata is the training data that I want to tune for nnet which is a matrix with 61 rows(samples) and 200

One possibility is to look at predict.nnet(), and - Write an R function that write out parts of an nnet object that are needed by predict.nnet() to an external file. - Re-write predict.nnet() in C, reading the model information from the external file. Obviously you'll also need the C source for the code that predict.nnet() calls, and modify those as needed to strip out dependency on R, if

Hello All, I am working with samr and nnet packages. I am following the steps given below: 1> I take a input file with signal values for 9506 genes and 36 chips , belonging to two classes. 2> I perform samr analysis on 80% of chip data from both the classes.(selected by random sampling) 3> I then use the data of only the significant genes from this samr analysis to train nnet. 4>

Hello, I am pretty new to R. I am working on neural network classifiers and I am feeding the nnet input from different regions of interest (fMRI data). The script that I am using is this: library (MASS) heap_lda <- data.frame(as.matrix(t(read.table(file="R_10_5runs_matrix9.txt")))*100000,syll = c(rep("heap",3),rep("hoop",3),rep("hop",3))) library(nnet)

Dear R people, I want to use the tune.nnet function of e1071 package to tune nnet . I am unable to understand the parameters of tune.nnet from the e1071 pdf document. I have performed nnet on a traindata and want to test it for class prediction with a testdata. I want to know the values of size,decay,range etc. parameters for which the prediction of testdata is best. Can anyone please tell me

HI, Dear R community, My data set has 2409 variables, the last one is response variable. I have used the nnet after feature selection and works. But this time, I am using nnet to fit a model without feature selection. I got the following error information: > dim(train) [1] 1827 2409 nnet.fit<-nnet(as.factor(out) ~ ., data=train, size=3, rang=0.3, decay=5e-4, maxit=500) # model

Hello ! I'd like to know to which of the FANN package network corresponds the R nnet network ? In more details, what is the R nnet activation function, what is the training algorithm (rprop, quickprop, ...) ? Also, it seems that the R nnet "decay" parameter in nnet corresponds to the "learning_rate" parameter in FANN. Correct ? Many thanks in advance ! Luc Moulinier

The TITLE for the nnet package is garbled: it comes out as nnet Feed-forward neural networks and multinomial log-linear nnet Feed-forward neural networks and multinomial log-linear models The problem is in maketitle: auk% cat DESCRIPTION Bundle: VR Version: 6.1-9 Date: 2000/07/11 Depends: R (>= 1.1) Author: S original by Venables & Ripley. R port by Brian Ripley

Greetings, I am having trouble calculating artificial neural network misclassification errors using errorest() from the ipred package. I have had no problems estimating the values with randomForest() or svm(), but can't seem to get it to work with nnet(). I believe this is due to the output of the predict.nnet() function within cv.factor(). Below is a quick example of the problem I'm

Hi there, I´ve a question concerning the nnet package in the area of survival analysis: what is the final value, which is computed to fit the model with the following nnet-c all: net <- nnet(cat~x, data=d, size=2, decay=0.1, censored=TRUE, maxit=20, Wts=rep(0,22), Hess=TRUE) where cat is a matrix with a row for each record and