similar to: R memory issue for writing out the file

I''m using acts_as_ferret and when I call Object.find_by_contents("A & B"), Ruby dies with the following message: ^Cruby(5014,0xa000cf60) malloc: *** vm_allocate(size=1069056) failed (error code=3) ruby(5014,0xa000cf60) malloc: *** error: can''t allocate region ruby(5014,0xa000cf60) malloc: *** set a breakpoint in szone_error to debug ruby(5014,0xa000cf60) malloc:

I am using the Openbase adapter and have had a similar glitch here and there, but after I go into production I consistently get an error on one page. ActionView::TemplateError (NoMemoryError: failed to allocate memory: SELECT * FROM ... I cannot track down the exact location of the error, but the production log says it was around:

Hi, I'm Sorry for any cross-posting. I've reviewed the archives and could not find an exact answer to my question below. I'm trying to generate very large sparse matrices (< 1% non-zero entries per row). I have a sparse matrix function below which works well until the row/col count exceeds 10,000. This is being run on a machine with 32G memory: sparse_matrix <-

Full_Name: Hans Kestler Version: 2.2.0 OS: 10.4.3 Submission from: (NULL) (84.156.184.101) > sam1.out<-sam(raw1[,2:23],raw1.cl,B=0,rand=124) We're doing 319770 complete permutations Error: cannot allocate vector of size 575586 Kb R(572,0xa000ed68) malloc: *** vm_allocate(size=589402112) failed (error code=3) R(572,0xa000ed68) malloc: *** error: can't allocate region

Dear R Experts, I am using R.app (the Mac OS X binary) for neuroimage analysis, so I am loading in some large image files. I get the following error in the middle of my script: > source("3dLME.R") Read 1 record Read 1 record Read 1 record Read 1 record Read 1 record Error: cannot allocate vector of size 3.1 Gb R(2081,0xa000d000) malloc: *** vm_allocate(size=3321675776) failed (error

Dear all, I am having a memory problem when analyzing a rather large data set with nested factors in R. The model is of the form X~A*B*(C/D/F) A,B,C,D,F being the independent variables some of which are nested. The problem occurs when using aov but also when using glm or lme. In particular I get the following response, Error: cannot allocate vector of size 1.6 Gb R(311,0xa000d000) malloc: ***

I want to do an unbalanced anova on 272,992 observations with 405 factors including 2-way interactions between 1 of these factors and the other 404. After fitting only 11 factors and their interactions I get error messages like: Error: cannot allocate vector of size 1433066 Kb R(365,0xa000ed68) malloc: *** vm_allocate(size=1467461632) failed (error code=3) R(365,0xa000ed68) malloc: ***

Full_Name: Eric Libby Version: 2.1.1 OS: OS Tiger Submission from: (NULL) (65.93.158.117) I am trying to analyze microarray data of 42 human arrays. I typed in the following instructions: library(affy) Data <-ReadAffy() eset <- expresso(Data, normalize.method="invariantset", bg.correct=FALSE, pmcorrect.method="pmonly",summary.method="liwong") And I get some

I''m using ferret (0.9.4) in rails, but outside of the "acts_as_ferret" plugin. Whenever I use a QueryFilter (even a very simple one), the server will crash after one, two, or three reloads of a page (same page, same query, same filter). It''s very non-deterministic and I can''t seem to reproduce it outside of my application environment (I can''t get it

Dear all, I am now doing the logistic regression using R. (glm, family=binomial). Besides the standardize summary statistics generated from R, I am also interested in some more informations concerning the model fitting / prediction etc; Particularly I am interested in "pseudo R squar" and "C statistic". I searched the R- help and could only get very limited information. (Post

Hi All, I want to print a square matrix of 7000 x 7000 into a text file. But I got a error after few hours of computation... -------- > write.table(MyDistMxDF, file = "temp.csv", sep=",", quote=F) *** malloc: vm_allocate(size=8421376) failed (error code=3) *** malloc[2889]: error: Can't allocate region Error: vector memory exhausted (limit reached?) *** malloc:

Hi all, I am having memory allocation problem with my R 2.2.1 for Mac OS. The following is the error message that I get. I do not get this message if I break down the large dataset in to sub datasets. I think breaking up the dataset is not a sustainable solution in the long run. The data that I am analysing is essentially big, and it would be reasonable to do the analyis on the whole dataset

I downloaded the Openssh-2.3.0p1 file and ran configure only to have it fail reporting the lack of libz. I found that configure was failing beacuse the test program did not include the libtinfo and libm which are needed to resolve references in libprot. I made changes to the configure script to add those libraries for SCO Openserver and then tried to compile the programs only to run into another

Anyone can locate what was wrong with the below problem on UnixWare 7.1.1 ? The file rand.h was finally found in one of the tests but configure still failed with ... checking for getpagesize... yes checking for OpenSSL directory... configure: error: Could not find working SSLeay / OpenSSL libraries, please install Thanh configure:2302: gcc -o conftest -g -O2 -Wall -I/usr/local/include

On Tue, 10 Jul 2007, Sandro Magi wrote: >> used. Your choices are to either override malloc/free for both the JIT >> and the program or for neither of them. > > I want to 'intercept' ALL allocations actually, including the stack if > possible, so the above suits me just fine. Ok, just provide your own malloc/free. :) -Chris -- http://nondot.org/sabre/

Dear list, I have been using the Rmath library for quite a while: in the current instance, I am calling dnt (non-central t density function) repeatedly for several million. When the argument is small, I get the warning message: full precision was not achieved in 'pnt' which is nothing unexpected. (The density calls pnt, if you look at the function dnt.) However, to have this happen a

I finally got around to looking at a bunch of patchs to configure.in, some of them from back in March. One from Carson Gaspar <carson at taltos.org> looked promissing at first glance but after many hours I just couldn't get it to work. Due to much demand, I have added optional PATH to --with-pcre, --with-zlib, and --with-tcp-wrappers. I have done extensive testin on --with-zlib, and

On 9 Jul 2004 at 13:11, Daniel Brown wrote: > On the other hand, I've run across a sysadmin who always enables his > toor accounts -- and changes its shell to bash. As a result, not only > is there an alternate root account (good in case 'root' trampled on by > accident or purpose), but you can get root bash as a login shell while > leaving the real root to its normal

On Sun, Aug 8, 2010 at 9:20 PM, Reid Kleckner <reid.kleckner at gmail.com>wrote: > On Sun, Aug 8, 2010 at 8:20 PM, Jakob Stoklund Olesen <stoklund at 2pi.dk> > wrote: > > > > On Aug 7, 2010, at 7:05 PM, Steven Noonan wrote: > >> I've been doing work on memory reduction in Unladen Swallow, and > >> during testing, LiveRanges seemed to be

I have my new port limping enough to compile a very basic function: int foo (int a, int b, int c, int d) { return a + b - c + d; } clang-cc -O2 yields: define i32 @foo(i32 %a, i32 %b, i32 %c, i32 %d) nounwind readnone { entry: %add = add i32 %b, %a ; <i32> [#uses=1] %sub = sub i32 %add, %c ; <i32> [#uses=1] %add4 = add i32 %sub, %d ; <i32>