similar to: Rmpi error messages

Hi guys, I'm trying to install Rmpi on the slave nodes of my cluster. The installation seems to work with no errors or warnings using this command: R CMD INSTALL --configure-args="--with-Rmpi-include=/usr/lib64/openmpi/1.3.2-gcc/include --with-Rmpi-libpath=/usr/lib64/openmpi/1.3.2-gcc/lib --with-Rmpi-type=OPENMPI" Rmpi_0.5-8.tar.gz But when I attempt to load Rmpi I get the

Dear R People: I am trying to put Rmpi with R-2.6.0 on an Ubuntu operating system. When I do the installation, all is well. But when I go into R and fire up the library, this is what I get: > library(Rmpi) Error in dyn.load(file, ...) : unable to load shared library '/home/cms/Desktop/R-2.6.0/library/Rmpi/libs/Rmpi.so': /home/cms/Desktop/R-2.6.0/library/Rmpi/libs/Rmpi.so:

Hello R-help! I am a systems administrator for the University of Southern California. I take care of it's general-purpose research cluster, and have recently been asked to provide access to a parallelized R platform. I do not have any previous experience using R, and have only ever had to do anything more then 'yum -y install R'. We have a myrinet MPI network, and use mpich1 as our

Dear R yet again! I finally got the Rmpi package to install! Yay!. However, when I go into R to use it, there is an error with the dyn.load file. This should be simple (allegedly). Please help. Thanks, Sincerely, Erin mailto: hodgess at gator.uhd.edu /home/faculty/hodgess/R-2.6.0/bin [hodgess at gator bin]$ ./R CMD INSTALL Rmpi_0.5-4.tar.gz

I am working on a SLES 10 cluster with R available on it. To better use my resources, I want to use Rmpi, but I am having a difficult time installing it. I have set the $R_LIBS variable correctly. The MPI libraries are available through the PGI compiler, but this R instance was compiled with GCC. The Rmpi package can be compiled and installed with %R CMD INSTALL Rmpi_0.5-5.tar.gz

After several trial and error attempts, I managed to install the Rmpi package without error on my Linux machine, running Fedora 5. I installed lam-7.1.2, lam-devel-7.1.2 and R-2.4.1, R-devel-2.4.1 The Package Rmpi_5.0-3.tar.gz, I installed once from within R and once from the command line to make sure, I link the right libraries: R CMD INSTALL Rmpi_5.0-3.tar.gz

I am running R 2.14.1 on a Windows XP (32 bit) system, and am trying to install the package 'Rmpi' to allow me to parallel process on all cores of a quad-core PC (and if that works well, I want to add extra slaves from a dual-core laptop). Rmpi appears to install OK (see below), but I am encountering the following error when I try and load the package: > utils:::menuInstallLocal()

Hello, I've installed R on my RHEL3 cluster and I am trying to get Rmpi to work properly. R is installed using the following ./configure --prefix=/home/apps/R-2.2.0 I installed snow using R CMD INSTALL /home/apps/snow And finaly Rmpi R CMD INSTALL /home/apps/Rmpi --configure-args=--with-mpi=/path/to/lam There were no errors or warnings upon installation. However when i perform the test

Hello everybody, I am trying to install Rmpi on 64-bit HP-Proliant server. I am facing the following error: * Installing *source* package 'Rmpi' ... Try to find mpi.h ... Found in /usr/local/mpich-1.2.7p1/include Try to find libmpi or libmpich ... Found libmpich in /usr/local/mpich-1.2.7p1/lib Try to find liblam ... checking for main in -llam... no liblam not found. Probably not LAM-MPI

This is a rather obscure question, I realize. I have written to the package author but have not heard back as of yet. I have read the README in the package, as well, but it didn't give me enough detail to diagnose the problems that I am having. (I did edit out the LAM-MPI check in zzz.R.in.) I am working to install Rmpi on top of MPICH on a beowulf cluster. Below is the output of the

Hi team, I am beginning on R and I try to install Rmpi library and I have problems, I have installed LAM-MPI on Rocks; [rcnavarro at hpc-cip ~]$ laminfo LAM/MPI: 7.1.1 Prefix: /opt/lam/gnu Architecture: x86_64-unknown-linux-gnu Configured by: root Configured on: Wed Oct 19 18:12:25 EDT 2005 Configure host: rocks-156.sdsc.edu Memory

Hi Folks, I've recently transitioned to Debian 8.0 and was having a hard time getting Rmpi to work. I believed I'd successfully installed dependencies via > sudo apt-get install r-cran-rmpi > apt-show-versions r-cran-rmpi r-cran-rmpi:amd64/jessie 0.6-5-1 uptodate but when installing the package I was still getting checking mpi.h presence... no checking for mpi.h... no

Hi R Gurus. I'm trying to install the Rmpi package. Here are the errors: checking for stdint.h... yes checking for unistd.h... yes checking mpi.h usability... no checking mpi.h presence... no checking for mpi.h... no Try to find libmpi or libmpich ... checking for main in -lmpi... no libmpi not found. exiting... ERROR: configuration failed for package 'Rmpi' ** Removing

Thanks--I'll try this new version when I get back to working on this--hopefully soon. luke On Tue, 23 Mar 2004, Hao Yu wrote: > Sorry. I have not been able to update Rmpi since the version > 0.4-4 on R site. However, I have been using and testing Rmpi > internally since 0.4-4. Now it is version 0.4-7. See the > attached package. It requires R 1.8.1 (no more serialize >

I am trying to build Rmpi on Suse 10.2 linux. While I would like to use the RPM version of liblam-7.1.2, I have not been able to do so. It seems that Rmpi makes some pretty strong assumptions when trying to guess the MPI version. Has anyone successfully built Rmpi against lam-7.1.2 recently using R-2.6.0? If so, can you give some pointers about where the libraries and header files need to be

Hi everyone I want to install Rmpi to use R in parallel mode in a Linux cluster (Ubuntu, Hardy Heron). It seems to be properly installed but a problem appears when loading Rmpi library. R version 2.11.1 (2010-05-31) > library("Rmpi") Error: package 'Rmpi' was built before R 2.10.0: please re-install it Should I remove R-2.11 and install R-2.10? I have tried to

Hi, I am using a cluster with LAM 7.1.3/MPI 2 and R 2.6.0. Rmpi version 0.5-5 is working very well. Now I have tested "Rmpi 0.5-6". During spawning the Rslaves I get an error: MPI_Error_string: error spawning process > sessionInfo() R version 2.6.0 (2007-10-03) x86_64-unknown-linux-gnu locale:

I'm just curious if anyone else has had problems with this configuration. I added the CRAN repository to apt and installed 2.5.0 with apt-get. I then did an install.packages("Rmpi") on cluster nodes. Rmpi loads and lamhosts() shows the nodes, but mpi.spawn.Rslaves() fails (something to do with temp files?). Rmpi works fine with the Edgy-native version of R (2.3.x) and installing

Hi, I try use Rmpi package to my compute. In my work I'm using eclipse version 3.6.2 and statEt version 0.10.0 (launch Rterm or RJ). Actually I observed strange behavior, when I try loading Rmpi directly I don't have any problem i.e.: library("Rmpi") mpi.spawn.Rslaves() 8 slaves are spawned successfully. 0 failed. master (rank 0, comm 1) of size 9 is running on: marcin-HP

Hi everybody! I have the next code which makes a reduction of the *a *variable in two slaves, using the Rmpi package. library(Rmpi) mpi.spawn.Rslaves(nslaves=2) reduc<-function(){ a<-mpi.comm.rank()+2 mpi.reduce(a,type=2, op="prod") return(paste("a=",a)) } mpi.bcast.Robj2slave(reduc) mpi.remote.exec(reduc()) cat("Product: ")