similar to: help for the first poster- a simple question

Dear readers of the list, I have a problem a comparison of two data from a vector. The comparison yields FALSE but should be TRUE. I have checked for mode(), length() and attributes(). See the following code (R2.10.0): ----------------------------------------------- # data vector of 66 double data X =

We have R 2.2.1 installed on a Linux cluster that seems to have problems loading either of our shared object libraries for packages. This seems to be happening on both local and global versions of packages that we install. However, we have only noticed this problem in the past 3 months on this R installation, whereas some users had success before then. It could be that something on our system

Re-sending this from 10/7. Please help! I'm really clueless how to fix this: System: Solaris 7, Software: R_1.7.1 for unix > R CMD INSTALL -l /Rdir/library haplo.stats_1.1.0.tar.gz -works like a charm-- no syntax errors, etc But problems are when I'm loading the library within R. > library(haplo.stats, lib.loc="/people/biostat3/sinnwell/Rdir/library") > Error

Hello everyone, Can anyone give me some hint/suggestion for unzipping a file in R? The help file for "zip.file.extract" function seems to be difficult to understand. For example, the name of my zip file is "refGene.txt.gz", which is located in "C:\Documents and Settings\Desktop\test1". I would like to unzip this file to the same directory. Here's

Hi all, Hope someone can help me. I start out with a matrix called haplo with 600 rows and two columns. To start with, the elements of the matrix are character strings of 20 numbers. I then want to create separate objects, called ha1-ha600, that are the concatenated 20 + 20 numbers, as numeric. I am having no trouble doing anything except getting the index i to paste to the object ha(i) in

Hi, I'd like to create a S4 class contains only one type of data. However, the number of slots varies. For example, I want to create a class "a", each slots in "a" contains numeric value only. > setClass("a", contains = "numeric") If I want to create an object "a" with only one slot containing c(3,4), I will write >

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Hi all, I have a R script that creates several input files for an analysis program. It loops through the matrix read into R and picks out submatrices and then creates a separate output file for each submatrix. The loop works great, but I am having trouble getting all the separate output files written. The line I have is: write.table(ch1d,

Hi, Anybody knows a function that can fit haplotype data to a Cox model. I've been searching it in the web without succeed. I use "haplo.stats" package, but unfortunatelly it's not possible to analyse survival data, amb I right?. Thanks in advance. Isaac Subirana (isubirana@imim.es) [[alternative HTML version deleted]]

Hello, I would like to use mapply to avoid using a loop but for some reason, I can't seem to get it to work. I've included copies of my code below. The first set of code uses a loop (and it works fine), and the second set of code attempts to use mapply but I get a "subscript out of bounds" error. Any guidance would be greatly appreciated. Xj, Yj, and Wj are also lists, and s2,

Sehr geehrte Damen und Herren, hiermit m?chte ich bei Ihnen nachfragen, ob die f?r Splus geschriebene "haplo.score"- Funktion auch unter R verwendet werden kann. siehe http://www.mayo.edu/statgen/software/ Wenn ja, wie sind die Aufrufe Splus CHAPTER -m und Splus make in R zu realisieren? Herzlichen Dank f?r Ihre M?he mit freundlichen Gr??en -- Dr. rer. nat. Andreas Fr?hlich

I got the error. I haven't been able to get a stand along case so that I can show it here. But could somebody give some clue on what could cause this error? Since I never defined xj[i], I don't understand where this error come from. Error in xj[i] : invalid subscript type 'list'

Below is a version of [.data.frame that is faster for subscripting rows of large data frames; it avoids calling duplicated(rows) if there is no need to check for duplicate row names, when: i is logical attr(x, "dup.row.names") is not NULL (S+ compatibility) i is numeric and negative i is strictly increasing "[.data.frame" <- function (x, i, j,

+glider The compiler hardly matters here, I would expect the same failures with clang. Alex, could you please take a look? --kcc On Thu, Nov 29, 2012 at 9:55 PM, Jack Howarth <howarth at bromo.med.uc.edu>wrote: > Nick, > Can you take a quick look at the asan_eh_bug.tar.bz testcase > I uploaded into the newly opened radr://12777299, "potential > pthread/eh bug exposed

Nick, Can you take a quick look at the asan_eh_bug.tar.bz testcase I uploaded into the newly opened radr://12777299, "potential pthread/eh bug exposed by libsanitizer". The FSF gcc developers have ported llvm.org's asan code into FSF gcc (and are keeping it synced to the upstream llvm.org code). I have been helping with the darwin build and testing -fsanitize=address against the

Hi all, It looks like the induction variable simplification pass prefers doing a zero-extension to compute the wider trip count of loops when extending the IV. This can sometimes result in loss of information making ScalarEvolution's analysis conservative which can lead to missed performance opportunities. For example, consider this loopnest- int i, j; for(i=0; i< 40; i++) for(j=0;

Conversion of a data frame to a matrix using as.matrix() when a column of the data frame is POSIXt and all other columns are numeric has changed in R 1.9.0 from R 1.8.1. The new behavior issues a warning message and converts to a character matrix. In R 1.8.1, such an object was converted to a numeric matrix. Here is an example. #### R 1.9.0 #### > foo <- data.frame(

LLVM3.8 version. https://bugs.llvm.org//show_bug.cgi?id=24233. The example can catch exception. But I use my own code for testing, CustomEHMemoryManager allocated memory address is very large, allocateCodeSection, allocateDataSection assigned address (more than 32 bit address space) is getting smaller and smaller. Cause registerEHFrames to fail. 3.9.1 or 4.0.0 version has been supported on win

Dear R-Users, I would like to know whether it is possible to draw several stacked barplots (i.e. side by side on the same sheet)... my data look like : Cond1 Cond1' Cond2 Cond2' Compartment 1 11,81 2,05 12,49 0,70 Compartment 2 10,51 1,98 13,56 0,85 Compartment 3 1,95 0,63 2,81 0,22 Compartment 4 2,08 0,17

Dear all, I'm using the package "Genetics", and I'm interested in the computation of D' statistics for Linkage Disequilibrium, for which the LD() command has been realised. Unfortunately I don't find any reference on "how" the D' is computed by the LD() function. In the package documentation it is generally referred as "MLE" estimation, but