similar to: For Subset or Reshaping the Table

Dear R users, I have a matrix like 85 .90 86 .89 87 .98 86 .87 88 .98 90 .78 88 .76 89 .56 90 .67 95 .67 89 .89 90 .87 91 .56 96 .87 90 .76 92.98 each pair of columns present a variable name and next the value. I have matrix with more than 500 rows and column. Now I want to convert this matrix in to. 85 .90 00 .00 00 86 .00 .89 .00 .87 87 .00 00 .98 00 88 .98 00 .76

Dear R Users, I have a network of 25000 total nodes and a list of 500 node which is a subset of all nodes. Now I want to calculate the APSP (all pair shortest path) matrix only for these 500 nodes. I would appreciate any help. Thanks in advance Dinesh -- Dinesh Kumar Barupal Research Associate Metabolomics Fiehn Lab UCD Genome Center 451 East Health Science Drive GBSF Builidng University of

Dear R users, I have a matrix like A X 1 B Y 2 C Z 3 I want to reshape this matrix into this format X Y Z A 1 B 2 C 3 Thanks in advance for your help. Dinesh -- Dinesh Kumar Barupal Junior Specialist Metabolomics Fiehn Lab UCD Genome Center 451 East Health Science Drive GBSF Builidng University of California DAVIS 95616

Dear R users I have a big matrix like 6021 1188 790 290 1174 1015 1990 6613 6288 100714 6021 1 0.658 0.688 0.474 0.262 0.163 0.137 0.32 0.252 0.206 1188 0.658 1 0.917 0.245 0.331 0.122 0.148 0.194 0.168 0.171 790 0.688 0.917 1 0.243 0.31 0.122 0.15 0.19 0.171 0.174 290 0.474

Hello, I've some problem with the ggplot2. Here's a small example: --8<-- library(ggplot2) molten <- data.frame(date=c('01','01','01','01', '02','02','02','02'), channel=c('red','red','blue','blue',

I am trying to use the "cast" function from the reshape package, where the formula is not passed in directly, but as the result of the as.formula() function. Using reshape v. 0.7.2 I am able to properly melt() by data with: > molten <- melt(x, id=1:2) then I can properly cast with this: > cast(molten, days ~ variable) but if I try > cast(molten,

Dear R Users, I'm trying to use the 'cast' function in the 'reshape' package to convert column-format data to gridded-format data. A sample of my dataset is as follows: head(finalframe) Latitude Longitude Temperature OrigLat p-value Blaney 1 -90 -38.75 NA -87.75 17.10167 NA 2 -90 135.75 NA -87.75 17.10167 NA 3 -90 80.25

Hi, I would like to plot a bunch of tree ring width data (time series) using ggplots, but I'm having trouble figuring out how to do it. My data is in a data.frame, with years as rownames and a distinct tree ring series in each column. So, something like this: rwl<-matrix(rnorm(800), nrow = 100) colnames(rwl) <- paste('V', 1:8, sep = '')

I was just thinking of a way to present data and if it is possible in R. I have a data frame that looks as follows (this is just mockup data). df location,"species1","species2","species3","species4","species5" "loc1",0.44,0.28,0.37,-0.24,0.41 "loc2",0.54,0.62,0.34,0.52,0.71 "loc3",-0.33,0.75,-0.34,0.48,0.61 location

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Dear useRs, I want to plot the following barplot with lines instead of bars. Is there a way? data <- data.frame(cbind(k = 0:3, fk = c(11, 20,7,2), f0k = c(13.72, 17.64, 7.56, 1.08), fkest = c(11.85, 17.78, 8.89, 1.48))) d <- t(data[,2:4]) barplot(d, beside=TRUE) Regards, Rafael. ____________________________________________________________________________________ [[elided Yahoo

Dear R-colleagues, I am quite a newbie to R fighting my stupidity to solve a probably quite simple problem of generating artificial data with defined features. I am conducting a study of inter-observer-agreement in child-bronchoscopy. One of the most important measures is Kappa according to Fleiss, which is very comfortable available in R through the irr-package. Unfortunately medical doctors

Dear R helpers, I have molten data which is : - > t3 Year variable value 1 2005 ICICI.Bank 274883700000 2 2006 ICICI.Bank 431668500000 3 2007 ICICI.Bank 595153000000 4 2008 ICICI.Bank 630857600000 5 2009 ICICI.Bank 545263300000 6 2005 HDFC.Bank 2658600000 7 2006 HDFC.Bank 7891000000 8 2007 HDFC.Bank 18031100000 9 2008

Dear R-users, I recently began using the ggplot2 package and I am still in the process of getting used to it. My goal would be to plot on the same grid a number of curves derived from two distinct datasets. The first dataset (called molten.data) looks like this : Column names : Perc, Week, Weight P10 21 333.3554 P90 21 486.0480 P10 22 452.6347 P90 22 563.8263 P10 23 575.0960 P90

Dear Help-Rs,   I have data similar to the following:   DF <- structure(list(X = 1:22, RESULT = structure(c(2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L), .Label = c("NEG", "POS"), class = "factor"), YR_MO = c(201011L, 201012L, 201101L, 201102L, 201103L, 201104L, 201105L, 201106L, 201107L, 201108L, 201109L, 201011L,

Hi, More questions in my ongoing quest to convert from RapidMiner to R. One thing has become VERY CLEAR: None of the issues I'm asking about here are addressed in RapidMiner. How it handles misisng values, scaling, etc. is hidden within the "black box". Using R is forcing me to take a much deeper look at my data and how my experiments are constructed. (That's a very

Hi all, I'm an R novice. I have data that's already formatted as "molten" that reshape should be able to work with. For example, the following was read in with read.csv(filename,sep=" ", header=FALSE) V1 V2 V3 V4 V5 1 original book book.source1.txt 328900494 3039.525 2 original book book.source1.txt

Hi, I'm using reshape to cast molten data. When I use the following command, R either crashes (when I use Notepad++) or gives an error (when I use Rgui or source()), BUT the error occurs not always, maybe only on half the attempts: w <- cast(v, id + code + productname + year + begin + end + specificDesc + specificDesc2 ~ type) Error in merge.data.frame(data, all.combinations, by =

hi there.. i got a problem with ggplot2. here my example: library (ggplot2) v1 <- c(1,2,3,3,4) v2 <- c(4,3,1,1,9) v3 <- c(3,5,7,2,9) gender <- c("m","f","m","f","f") d.data <- data.frame (v1, v2, v3, gender) d.data x <- names (d.data[1:3]) y <- mean (d.data[1:3]) pl <- ggplot (data=d.data, aes (x=x,y=y)) pl

Hi everyone. Long time listener, first-time caller here. I have a data set that's been melted with the excellent reshape package, but I can't seem to cast it the way I need to. Here's the melted data's structure: > str(mdat) 'data.frame': 6978 obs. of 4 variables: $ VehType : Factor w/ 2 levels "Car","Truck": 1 1 2 1 1 2 1 1 1 1 ... $ Year :