Displaying 20 results from an estimated 10000 matches similar to: "a kinder view of Type III SS"
2002 Jan 28
4
Type III Sums of Squares
I am trying to reproduce an analysis done in SAS from which Type III Sums of
squares are used. How can you get Type III sums of squares in an aov similar
to what SAS provides?
With best wishes and kind regards I am
Sincerely,
Corey A. Moffet
Instructor
Department of Range, Wildlife, and Fisheries Management
Mail Stop 2125
Texas Tech University
Lubbock, Texas 79409-2125
(806) 742-2843 Voice
2008 Sep 26
1
Type I and Type III SS in anova
Hi all,
I have been trying to calculate Type III SS in R for an unbalanced two-way
anova. However, the Type III SS are lower for the first factor compared to
type I but higher for the second factor (see below). I have the impression
that Type III are always lower than Type I - is that right?
And a clarification about how to fit Type III SS. Fitting model<-aov(y~a*b)
in the base package and
2008 May 06
1
Type I or III SS with mixed model function lme
Hello, I have come across a result that I cannot explain, and am hoping that
someone else can provide an answer. A student fitted a mixed model using
the lme function: out<- lme(fixed=Y~A+B+A:B, random=~1|Site). Y is a
continuous variable while A and B are factors. The data set is balanced
with the same number of observations in each combination of A and B. There
are two hierarchical
2002 Mar 01
4
Type III Sum of Squares
Hi,
When doing a two-ways anova in R and comparing my same results with an SPSS
output, I noticed that R calculated type I Sum of Squares. Is it possible to
use Type III Sum of Squares?
Thanks,
S?bastien Plante
Institut des Sciences de la Mer de Rimouski (ISMER)
-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-
r-help mailing list -- Read
2003 Mar 06
6
type III Sum Sq in ANOVA table - Howto?
Hello,
as far as I see, R reports type I sums of squares. I'd like to get R to
print out type III sums of squares.
e.g. I have the following model:
vardep~factor1*factor2
to get the type III sum of squares for factor1 I've tried
anova(lm(vardep~factor2+factor1:factor2),lm(vardep~factor1*factor2))
but that didn't yield the desired result.
Could anyone give me a hint how to proceed?
2008 Oct 30
1
package pls
Hi,
For the package "pls", I need to understand the algorithm for
"simpls.fit" for Partial Least Squares. I'm not sure if simpls.fit tries
to find the weight vectors (loadings) to maximize which of the two:
Cov(Xw, y) or maximize Cov^2(Xw,y)? Are these objective functions
equivalent? (in some texts, they use the first and in other texts, they
use the second obj.
2013 Apr 24
2
Trouble Computing Type III SS in a Cox Regression
I should hope that there is trouble, since "type III" is an undefined concept for a Cox
model. Since SAS Inc fostered the cult of type III they have recently added it as an
option for phreg, but I am not able to find any hints in the phreg documentation of what
exactly they are doing when you invoke it. If you can unearth this information, then I
will be happy to tell you whether
2003 Dec 11
2
typeIII SS for lme?
To avoid angry replies, let me first say that I know that the use of
Type III sums of squares is controversial, and that some statisticians
recommend instead that significance be judged using the non-marginal
terms in the ANOVA. However, given that type III SS is also demanded by
someā¦ is there a function (equivalent to drop1 for lm) to obtain type
III sums of squares for mixed models using the
2005 Nov 24
2
type III sums of squares in R
Hi everyone,
Can someone explain me how to calculate SAS type III sums of squares in
R? Not that I would like to use them, I know they are problematic. I
would like to know how to calculate them in order to demonstrate that
strange things happen when you use them (for a course for example). I
know you can use drop1(lm(), test="F") but for an lm(y~A+B+A:B), type
III SSQs are only
2001 Oct 17
3
Type III sums of squares.
Peter Dalgaard writes (in response to a question about 2-way ANOVA
with imbalance):
> ... There are various
> boneheaded ways in which people try to use to assign some kind of
> SumSq to main effects in the presence of interaction, and they are all
> wrong - although maybe not very wrong if the unbalance is slight.
People keep saying this
2010 Mar 01
5
Type-I v/s Type-III Sum-Of-Squares in ANOVA
Hello,
I believe the aov() function in R uses a "Type-I sum-of-squares" by
default as against "Type-III".
This is relevant for me because I am trying to understand ANOVA in R using
my knowledge of ANOVA in SPSS. I can only reproduce the results of an ANOVA
done using R through SPSS if I specify that SPSS uses a Type-I
sum-of-squares. (And yes, I know that when the sample
2017 Nov 24
2
number to volume weighted distribution
Hi Duncan
I tried Ecdf and/or wtd.quantile from Hmisc and it is working (probably).
Ecdf(x, q=.5)
Ecdf(x, weights=xw,col=2, add=T, q=.5)
wtd.quantile(x)
0% 25% 50% 75% 100%
10 10 10 100 300
wtd.quantile(x, weights=xw, type="i/n")
0% 25% 50% 75% 100%
10.0000 138.8667 192.5778 246.2889 300.0000
But could you please be more specific in this?
>
2006 Mar 15
1
(newbie) Weighted qqplot?
Folks,
Normally, in a data frame, one observation counts as one observation
of the distribution. Thus one can easily produce a CDF and (in Splus
atleast) use cdf.compare to compare the CDF (BTW: what is the R
equivalent of the SPlus cdf.compare() function, if any?)
However, if each point should not count equally, how can I weight the
points before comparing the distributions? I was thinking of
2007 Oct 11
2
Type III sum of squares and appropriate contrasts
I am running a two-way anova with Type III sums of squares and would
like to be able to understand what the different SS mean when I use
different contrasts, e.g. treatment contrasts vs helmert contrasts. I
have read John Fox's "An R and S-Plus Companion to Applied Regression"
approach -p. 140- suggesting that treatment contrasts do not usually
result in meaningful results with Type
2009 Jul 23
1
dimension trouble for a matrix
Dear R People:
I'm having trouble with something that should be very simple.
I'm setting up a matrix outside of a loop and writing items into it
during the loop.
Here is the output:
> glob3b("sites.info")
dim 27 3
[1] "/raid1/osg-app"
Error in xy[i, ] : incorrect number of dimensions
Here is the function:
> glob3b
function(xx) {
x.df <-
2017 Nov 24
0
number to volume weighted distribution
Hi Petr,
I think that Duncan suggests something like this:
x<- c(rep(10,20), rep(300,5), rep(100, 10))
tx <- table(x)
prop.x <- tx / sum(tx)
vx <- as.integer(names(tx))
prop.wx <- tx * vx / sum(tx * vx)
plot(ecdf(x))
plot(vx, cumsum(prop.x), ylim = 0:1)
plot(vx, cumsum(prop.wx), ylim = 0:1)
Best regards,
Thierry
ir. Thierry Onkelinx
Statisticus / Statistician
Vlaamse
2006 Aug 26
5
Type II and III sum of square in Anova (R, car package)
Hello everybody,
I have some questions on ANOVA in general and on ANOVA in R particularly.
I am not Statistician, therefore I would be very appreciated if you answer
it in a simple way.
1. First of all, more general question. Standard anova() function for lm()
or aov() models in R implements Type I sum of squares (sequential), which
is not well suited for unbalanced ANOVA. Therefore it is better
2003 Oct 21
1
Type III Sum of Squares Calculation
HI All:
Can anyone give me the formulae/steps for calculating the type III sum of
squares for an unbalanced 2-way ANOVA design? Eg. we are looking at 8
treatments x 4 doses, with unequal numbers of replications within the
groups. I really need the stepwise calculation, as I would try to put it
in my own code (possibly in Visual Basic) to automate the task.
Thanks very much.
Karth.
2005 Nov 08
1
Type II and III sums of squares with Error in AOV
I've recently run into the problem of using aov with nested factors,
and wanting to get the type II and III sums of squares. Normally Anova
from the car package would do fine, but it doesn't like having an Error
included, so
my.aov <-aov(Response ~ Treatment + Error(Treatment:Replicate))
Anova(my.aov, type="II")
yields
Error in Anova(nested.anova) : no applicable method
2007 Jul 10
4
type III ANOVA for a nested linear model
Hello,
is it possible to obtain type III sums of squares for a nested model as
in the following:
lmod <- lm(resp ~ A * B + (C %in% A), mydata))
I have tried
library(car)
Anova(lmod, type="III")
but this gives me an error (and I also understand from the documentation
of Anova as well as from a previous request
(http://finzi.psych.upenn.edu/R/Rhelp02a/archive/64477.html) that it is