similar to: wilcox test on two data frames

Hi all, I am not a skillful R programmer and has I am handling with large dataframes (about 30000 x 300) I am in need of an efficient function. I have 4 dataframes with the same dimension. I need to generate other dataframe with the some dimension than the others where in each position it has the median value of the 4 values in the same position coming from the 4 dataframes. Grateful by your

Hi all, I would like to know if it is posible by, someway, to get colMeans from a data.frame with numeric as well as character data, dispersed all over the object. Note that I would like to get colMeans neglecting character data. I am really in need of some function proceeding in that way… All the best Diogo André Alagador [[alternative HTML version deleted]]

Dear all, I have 3 matrices with the same dimension, A,B,C and I would like to produce a matrix D where in each position would retrieve the max(or min) value along A,B,C taken from the same position. I guess that apply functions should fit, but for matrices objects I am not getting it. thanks in advance, Diogo André Alagador [[alternative HTML version deleted]]

Thanks a lot for all of you that have reply me about opening and ending R workspaces in BATCH mode. However replies were a king general and I?m afraid I could not take the entire message from them. Therefore I chose to expose here a representative fraction of my work. I have 50 Rdata files (F1,F2,F3,F4, ,F50) with objects inside. I need to: open F1: - perform some simple operations

Hy all, I apologize for my ingenuity in regard to interfaces in R, but I do need it for my work. In that respect I took a simple and small example from the net (the "hello world", one) to interface R with C. I have a Windows XP OS using R.2.5.0 and in that regard I have installed the Perl and RTools files to my PC. I also wrote a proper path file, as suggested. The C program is:

To all, I am undergoing an analysis involving big matrices of about 30000x200 which I have to handle in a more efficient way. So I would like some advice to build such efficient function to deliver the following result: - starting with 2 matrices of the same dimension (eg. A and B) 0 0 3 5 6 0 0 5 A= 0 0 6 4 B= 0 4 3 5

Hi all, I'm handling massive data.frames and matrices in R (30000 x 400). In the 1st column, say, I have 0s and 1s indicating rows that matter; other columns have probability values. One simple task I would like to do would be to get the column mean values for signaled rows (the ones with 1) As a very fresh "programmer" I have build a simple function in R which should not be very

Hi all, I have a matrix of about 100.000?x 4?that I need?to classify using euclidean metric. For that I am using dist?or daisy functions, but I am afraid that the message: Error in vector("double", length) : vector size specified is too large, means too much lines. Can anyone suggest me how should I analyse this matrix? Thanks in advance, Diogo Andr? Alagador MNCN,CSIC, Madrid, Spain

I already searched for information regarding the batch file operations within R. But I could not locate the information I need. Basically I have a doubt regarding the procedures on the batch use of several script files (*.R). How can I do this? How can I define the order of files? My intention is to programme openings, math operations and savings of *.Rdata sessions, but in a sequential

Dear all, I have a matrix with positive and negative values. >From this I would like to produce 2 matrices: 1st - retaining positives and putting NA in other positions 2nd - retaining negatives and putting NA in other positions and then apply rowMeans for both. I am trying to use the function ifelse in the exemplified form: ifelse(A>0,A,NA) but by putting A as a 2nd parameter it

Dear All, I am using wilcox.test to test two samples, data_a and data_b, earch sample has 3 replicates, suppose data_a and data_b are 20*3 matrix. Then I used the following to test the null hypothesis (they are from same distribution.): wilcox.test(x=data_a, y=data_b, alternative="g") I got pvalue = 1.90806170863311e-09. When I switched data_a and data_b by doing the following:

Dear all, I'm a newbie to R and I would really apperciate any help with the following: I have two lists, l1 and l2: l1: $"A*0101" [1] 0.076 0.109 0.155 0.077 0.09 0 0 0.073 [9] 0.33 0.0034 0.0053 $"A*0247" [1] 0 0 0.5 .004 0 0 0 $"A*0248" [1] 0 0 0.3 0 0.06 .... l2: $"A*1101" [1] 0.17 0.24 0.097 0.075 0.067 $"A*0247" numeric(0)

On Fri, 27 Jan 2023 at 20:42, Diogo Ivo <diogo.ivo at tecnico.ulisboa.pt> wrote: > > On Fri, Jan 27, 2023 at 04:00:59PM +1000, Ben Skeggs wrote: > > On Fri, 20 Jan 2023 at 21:37, Diogo Ivo <diogo.ivo at tecnico.ulisboa.pt> wrote: > > > > > > On Wed, Jan 18, 2023 at 11:28:49AM +1000, Ben Skeggs wrote: > > > > On Mon, 16 Jan 2023 at 22:27, Diogo

Hi, I became a little bit confused when working with the Wilcoxon test in R. As far as I understood, there are mainly two versions: 1) wilcox.test{stats}, which is the default and an approximation, especially, when ties are involved 2) wilcox_test{coin}, which does calculate the distribution _exactly_ even, with ties. I have the following scenario: #---BeginCode--- # big example size = 60

Dear Contributors I have a problem with the collection of data from the results of a test. I need to perform a comparative test over groups of data , recall the value of the pvalue and create a table. My problem is in the way to replicate the analysis over and over again over subsets of data according to a condition. I have this database, called y: gg t1 t2 d 40 1 1

Hi, I'm having some troubles in using the ADE-4 package. I want to analyze data for the Outlying Mean Index in the function 'niche'. I've got two matrixes: one for environmental data and the other for species abundance data. But to implement the analysis, as I understand it, I need to put tocheger these two matrixes in one, as in the example provided with the package. Un

On Fri, 20 Jan 2023 at 21:37, Diogo Ivo <diogo.ivo at tecnico.ulisboa.pt> wrote: > > On Wed, Jan 18, 2023 at 11:28:49AM +1000, Ben Skeggs wrote: > > On Mon, 16 Jan 2023 at 22:27, Diogo Ivo <diogo.ivo at tecnico.ulisboa.pt> wrote: > > > On Mon, Jan 16, 2023 at 07:45:05AM +1000, David Airlie wrote: > > > > As a quick check can you try changing > >

hi, folks, how have you gone about reporting a p-value from a test when the returned value from a test (in this case a rank-sum test) is numerically equal to 0 according to the machine? the next lowest value greater than zero that is distinct from zero on the machine is likely algorithm-dependent (the algorithm of the test itself), but without knowing the explicit steps of the algorithm

Dear List, after updating the exactRanksumTests package I receive a warning that the package is not developed any further and that one should consider the coin package. I don't find the signed rank test in the coin package, only the Wilcoxon Mann Whitney U-Test. I only found a signed rank test in the stats package (wilcox.test) which is able to calculate the exact pvalues but unfortunately

Dear, I am using the solnp command (package Rsolnp) for a problem with equality and inequality constraints. I am not getting convergence for my problem but apart that I get 1 warning per iteration saying: ?In cbind(temp, funv) : number of rows of result is not a multiple of vector length (arg 1)?. I checked for equality and inequality functions and they seem fine to me. Where this