similar to: Problem (Bug?) with readLines on Suze

Hello, I am using R version 1.8.1 on a linux machine (Suse 8.2.). I have problems to use readLines() with urls. This seems to be a problem with our proxy-server. Downloading files work with download.file() with wget but not without: > download.file(url = "http://cran.r-project.org/src/contrib/PACKAGES", destfile = "test.txt", method = "wget", cacheOK = FALSE)

Hello, In order to increase the performance of a script I'd like to sort very large vectors containing repeated integer values. I'm not interesting in having the values sorted, but only grouped. I also need the equivalent of index.return from the standard "sort" function: f(c(10,1,10,100,1,10)) => grouped: c(10,10,10,1,1,100) ix: c(1,3,6,2,5,4) is there a way

Hi, Afraid I dont have a very new system to try out Xen.. It''s an ia32 PIII machine with 1GB memory (that''s gud i believe). When I try to build the initrd image for my xen kernel, i get error messages complaining about missing modules, so am trying to compile them on my own. Could find support for the remaining three, but am left with lpfcdd.ko. Couldnt find an appropriate

I am using readLines to read a fairly large ASCII file. readLines reads a fixed number of lines, then other R code processes the data, then readLines reads the same number of lines again, then other R code processes the data, then .... Sort of like: conn<-file('filename','r') for (chunk in 1:100000) { Lines<-readLines(conn,n=25) # process "Lines" }

Hi All, I met a problem using readLines function to return the data from Google maps. readLines(url(" http://ditu.google.cn/maps/geo?q=+qianshuichong,+guichi+anhui,+CN&output=csv&key=ABQIAAAAq8Fnd_oUka-7RdS6BrD7GBTqeABoQuNTXS36G_rkiwQnKRW6GBTkns8JpKz6y6dScgB8827dlddUlg"), n=1, warn=FALSE) [1] "200,4,30.6528380,117.4872250" The above code is ok because the

Hello, I'm looking for a function that counts the occurences of a given character within a string. f('|','ab|c|d') => 2 More precisely, I need to complete a vector of strings to ensure that all elements have the same count of a "separator": a|b|c a |a|b|c|d => a|b|c|| a|||| |a|b|c|d I guess that scan makes use of an internal function that would do

When I read a .gz file with readLines() in 3.4.3, it returns text (and a warning). In 3.5.0, it gives a warning, but no text. Is this expected behavior or a bug? 3.4.3: > source_file = "1k_annotation.gz" > readfile_con <- gzfile(source_file, "r") > readLines(readfile_con, n = 5) [1] "#chr\tpos\tref\talt\t <truncated output here> Warning message: In

The issue is that readLines() tries to seek (for reasons I don't understand) in the non-blocking case, but silently fails for "stdin" since it's a stream. This confused the buffering logic. The fix is to mark "stdin" as unable to seek, but I do wonder why readLines() is seeking in the first place. Anyway, I'll get this into patched ASAP. Thanks for the report.

You bet - it's available on github at https://github.com/UW-GAC/wgsaparsr/blob/master/tests/testthat/1k_annotation.gz -Ben On Thu, May 10, 2018 at 4:17 PM, Michael Lawrence <lawrence.michael at gene.com > wrote: > Would it be possible to get that file or a representative subset of it > somewhere so that I can reproduce this? > > Thanks, > Michael > > On Thu, May

Can i use "readLines" to extract only the linees with a specific word within? If yes, how? Tnx for help. -- View this message in context: http://r.789695.n4.nabble.com/Question-about-readLines-tp3044701p3044701.html Sent from the R help mailing list archive at Nabble.com.

>>>>> Martin Maechler >>>>> on Mon, 28 May 2018 10:28:01 +0200 writes: >>>>> Ralf Stubner >>>>> on Fri, 25 May 2018 19:18:58 +0200 writes: >> Dear all, I would like to draw you attention to this >> question on SO: >>

Working on Windows I have had to deal with CSV files that, unfortunately, contain embedded Control-Zs, i.e. ASCII character 26 in decimal, and the readLines() function in R on Windows (2.15.2 and 3.0.0) appears to truncate at the control-Z. There is no problem at all on Ubuntu Linux with R 3.0.0. Am I mistaken or is this genuine? # Create a small file with embedded Control-Z h3 <-

Hello r-devel, The attached Code page 437-encoded file contains 245 characters (including the final newline), but readLines only reads 242 of them: > test_text <- readLines(file('437__characters.txt', encoding='437')) Warning message: In readLines(file("437__characters.txt", : incomplete final line found on '437__characters.txt' > test_text [1]

Dear R-users, I use "readLines" to read data, but when processing the large data set, there are few files which can not be readed in: 48: In readLines(name_c[i]) ... : incomplete final line found on 'C:/Documents and Settings/lma/My Documents/habitdata/244052900243997/calllog/calllog_log-20050505T121611.txt' ... Whats the problem about this? Regards, Tammy

Consider this code. This is R 3.4.2, but based on a quick look at the NEWS, this has not been fixed. tryCatch( readLines(tempfile(), warn = FALSE)[1], error = function(e) NA, warning = function(w) NA ) rm(list=ls(all.names = TRUE)) gc() showConnections(all = TRUE) If you run it, you'll get a connection you cannot close(), i.e. the last showConnections() call prints: ?

Hello, I'm looking for a fast way to retrieve the position of elements from a vector which match element in another vector. Example va<-c('a','e') vb<-c('a','b','c','d','e','f','e') f(va,vb) should return c(1,5,7) I have 2 different cases: I) my vector vb contains only distinct values II) my vector vb may

Full_Name: Marc Mamin Version: 1.8, 2.0.0 OS: Windows & Linux Submission from: (NULL) (217.17.202.254) Using only the beginning of a column name will match it: >aaa<-1 >df<-as.data.frame(aaa) >names(df) [1] "aaa" >df$a [1] 1 !!!!!!!!! (I expect df$a to be undefind) >df$x >NULL Compare with: > df["aaa"] aaa 1 1 > df["a"]

Hi, I am reading a large space-delimited text file into R (41 columns and many rows) and need to do run each row's values through another R object and then write to another text file. So, far using readLines and writeLines seems to be the best bet. I've gotten the data exchange working except each row is read in as one 'chunk', meaning the row has all values between two quotes

Hi: I have also just stumbled into this bug. Unfortunately, I can not change the data my program receives from stdin. My code runs in a larger system and stdin is sent to a Docker container running my R code. The protocol is I read a line, readLines("stdin", n=1), do some actions, send output on stdout, and wait for the next set of data. I don't have control over this protocol, so

Hello, I'd like to insert a "wait" function in my code. The reason is that I output timestamped files and I want to ensure that at least 1 second separes 2 files to avoid overwriting the previous file. Thanks, Marc Mamin