similar to: summary: Sweave - documenting a long function

Hi, I would like to use Sweave to document a long function. Is it possible to split the function's code into chunks such that Sweave will accept each chunk without complaining. I have tried various approaches without sucess but I feel sure that someone has done this already. Here is one attempt ============== % First, define the funciton header <<defFunHdr, eval=FALSE>>= x <-

Almost all of the coxme package and an increasing amount of the survival package are now written in noweb, i.e., .Rnw files. It would be nice to process these using the Sweave function + a special driver, which I can do using a modified version of Sweave. The primary change is to allow the following type of construction <<coxme>> coxme <- function(formula, data, subset, blah blah

Hi All, I am running Ubuntu Feisty (7.04) on a Thinkpad T41. I've installed the nowebm package for Ubuntu. Working from this HowTo: http://www.ci.tuwien.ac.at/~leisch/Sweave/example-1.Snw I try to compile the example *.Snw as in the Sweave manual: mdj at lapmdj:~/Desktop/Sweave/example1$ noweb example-1.Snw Can't open output file Despite the error, a *.tex file is produced. Now I am

I can't get Emacs to automatically do syntax highlighting of Sweave files. I have followed Friedrich's suggestion for code to insert into my .emacs file. The complete section from my .emacs file is given below. When I load a *.Snw file, font is white until I press M-x, then the first code and document chunks get highlighted, but not the rest of the file. Latex and Noweb menus are

Dear list, I have tried to setup my Xemacs for use with Sweave, which I indend to learn. I have followed the instructions in the Sweave FAQ, that is to say, I put (defun Rnw-mode () (require 'ess-noweb) (noweb-mode) (if (fboundp 'R-mode) (setq noweb-default-code-mode 'R-mode))) (add-to-list 'auto-mode-alist '("\\.Rnw\\'" . Rnw-mode)) (add-to-list

Hallo! Trying to configure Xemacs to work with .snw files on windows 2000. Tried to do it how it is described in the FAQ for Sweaves. When starting xemacs with and Snw file *ESS* buffer contains hundrets of lines and the few last ones. (ess-loop-timeout . 500000) (inferior-ess-primary-prompt . ^) (inferior-ess-secondary-prompt . ^) (comint-use-prompt-regexp-instead-of-fields . t)

I have come across an apparent bug in the operation of Sweave. If I load the package R2HTML then execution of \Sexpr{} in an *.Rnw file no longer works. The \Sexpr{} code is simply written to the *.tex file. Below are my *.Rnw file, commands, and output. The Sweave file, Sweave-test-1_short.Rnw: % -*- mode: noweb; noweb-default-code-mode: R-mode; -*- \documentclass{article} \title{A Test

Hi, as far as I understand it, the new R devel feature of processing non-Sweave vignettes will (a) locate any "[.][RrSs](nw|tex)$" or ".Rmd" files, (b) check for a registered vignette engine, (c) process the file using the registered "weave" function, (d) and possibly post process the generated weave artifact (e.g. a *.tex file). I'd like to propose to extend

I am having some trouble getting reftex, in particular the bibtex related features, to work properly in xemacs when editing text in Sweave files. I have added (defun Rnw-mode () (noweb-mode) (if (fboundp 'R-mode) (setq noweb-default-code-mode 'R-mode))) (add-to-list 'auto-mode-alist '("\\.Rnw\\'" . Rnw-mode)) (add-to-list 'auto-mode-alist

System info: Mandrake 9.0 R Version 1.6.1 ESS 5.1.21 Emacs 21.2.1 ------------------- Colleagues I have followed suggestions by David Whiting, Friedrich Leisch and Frank Harrell, but have a few more queries. 1. On formatting: I added the suggested sweave customization to my .emacs file ; Sweave customisation (defun Rnw-mode () (require 'ess-noweb) (noweb-mode) (if (fboundp

Hello, Sweave seems to have trouble processing german letters in R. For example, my noweb R-input looks like this. <<>>= Oberfl?chenfehler = c(4, 11, 6, 2, 7, 9) @ If I send it through Sweave, I get the following error message. error: chunk 1 Error in parse(text = chunk) : unexpected input in "Oberfl??" extra: Warning message: In readLines(f[1]) : underfull last line in

R users, I'm at a loss with a problem considering running .tex files produced by Sweave. When I run (R 2.7.0): --------------------------------------------------- #Taken from ?Sweave testfile <- system.file("Sweave", "Sweave-test-1.Rnw", package = "utils") ## enforce par(ask=FALSE) options(device.ask.default=FALSE) ## create a LaTeX file Sweave(testfile)

I have searched the r-help files but have not been able to find an answer to this question. I apologize if this questions has been asked previously. (Please excuse the ludicrousness of this example, as I have simplified my task for the purposes of this help inquiry. Please trust me that something like this will in fact be useful what I am trying to accomplish. I am using R 2.4.1 in Windows XP.)

http://www.analytics.washington.edu/~rossini/courses/cph-statcomp/ Lecture/Labs 1 and 2 are on For ESS, ESS-Noweb-Sweave. Lecture/Lab 4 is on parallel computing with R (each Lecture/Lab was just under 2 hours). Comments/corrections welcome, they were used last week here in Copenhagen, so "most" of the bugs are out. best, -tony p.s. Lecture/Lab 3 on visualization needs to be

Hi, I recently compiled 1.6 on NT4 but I am having a problem with Sweave. Using the inbuilt 'Sweave-test-1.Rnw' file as an example: ------- > library(tools) > testfile <- file.path(.path.package("tools"), "Sweave", "Sweave-test-1.Rnw") ## create a LaTeX file Sweave(testfile) testfile <-

I large datset that includes subjects(ID), Dates and events that need to be counted.  Not every date includes an event, and I need to only count one event per 30days, per subject.  So in essence, I need to create a 30-day "black out" period during which time an event cannot be "counted" for each subject.  The reason is that a rule has been set up, whereby a subject can only be

Hi, I'm having trouble sweaving the following example: --8<------------------------schnipp------------------------->8--- \documentclass{article} \begin{document} \SweaveOpts{echo=FALSE} @ <<>>= rm(list=c(ls())) library(Hmisc) library(ISwR) data(energy) energy$log <- log(energy$expend) attach(energy) @ %def @ <<results=tex>>= mysum <- summary(stature ~

Greetings! I have a few colleagues who like the idea of Sweave, but have failed to become enlightened monks of the One True Editor (http://www.dina.dk/~abraham/religion/) Are there any other Microsoft-centric editors or IDEs which have solid support for writing SWeave documents (dual R / LaTeX enhancements similar to ESS's support)? Has anyone tried the folding editors which support Noweb?

I have been using Aspell on a Linux system, but it doesn't understand the noweb chunks, which I'd rather it not spellcheck. I can run it on the generated .tex files, but then changes I make during the spellcheck will not be propagated back to the original source. Any suggestions on how to spellcheck Sweave documents? I see from a search that some people seem to be trying Flyspell on

Hi! Thanks for providing great help in R-related statistics. Now, however I'm stuck. I'm not a statistics person but I was recommended to use R to perform a nmds plot and PerMANOVA of my dataset. Sample(treatment) in the columns and species (OTU) in the rows. I have 4 treatments (Ambient Temperature, Ambient temperature+Low pH, High temperature, High temperature+low pH), and I have 16