similar to: New versions of Matrix and lme4 packages for R-2.4.0

Dear all, I'm trying to install lme4 (after having installed R 2.4.0 from source, and having installed the latest Matrix package). lme4 fails with the following message: pedigree.o definition of _lme4_xSym in section (__DATA,__common) pedigree.o definition of _lme4_ySym in section (__DATA,__common) make: *** [lme4.so] Error 1 ERROR: compilation failed for package 'lme4' ** Removing

I've tried unsuccessfully to install lme4 on two different Redhat systems but I've not noticed anything on this list to indicate anyone else has had similar problems. * Installing *source* package 'lme4' ... ** libs gcc -I/usr/local/R-2.4.0/include -I/usr/local/R-2.4.0/include -I/usr/local/include -fpic -g -O2 -std=gnu99 -c init.c -o init.o In file included from init.c:1:

Dear R users, I'm trying to use function 'refit' from lme4 and I get this error that I can't understand: > refit(dolo4.model4,cbind(uu,50-uu)) Error in function (classes, fdef, mtable) : unable to find an inherited method for function "refit", for signature "mer", "matrix" if I try: > refit(dolo4.model4,uu) Error in asMethod(object) :

Dear all, I have three concerns: 1) I am running models with the lme4 package. I cannot find a way to pull out a vector of the fitted values and the residuals. Does anybody know how to do it? 2) How can I nest a random effect variable into a "two-level" fixed effect variable? 3) Suppose I have the following model: y = a + b|c + d + error, where 'a' is a fixed effect, 'c'

Full_Name: Din Chen Version: 2.4.0 OS: Windows XP Submission from: (NULL) (66.17.122.18) I just updated the R.2.4.0. and got the error message for random effect modelling, which was working on R.2.3.1. library(lme4) mmod <- lmer(bright ~ 1+(1|operator), pulp) summary(mmod) Then when I tried to extract the residuals and random effect using: resid(mmodr) ranef(mmodr) I got error message:

I just installed R 2.4 on a windows machine and installed the lme4 package version 0.9975-1. Unfortunately this version requires the 0.9975-2 version of the Matrix package which I cannot seem to find. It seems the newest version I can find is 0.9975-1. Is there somewhere I could find this newer version. Mark Lyman

Thanks, Douglas. It works. Only one gripe. Every time I want to try a new version of your software, I have to get, compile, patch the latest bleeding edge version of R as well: ERROR: This R is version 2.3.1 package 'Matrix' needs R >= 2.4.0 Douglas Bates wrote: > Versions 0.9975-1 of the Matrix and lme4 packages will soon be available on > CRAN for use with R

While trying to install a package, I received this error ** preparing package for lazy loading Error in matchSignature(signature, fdef, where) : more elements in the method signature (2) than in the generic signature (1) A more helpful variant is Error in matchSignature(signature, fdef, where) : more elements in the method signature (2) than in the generic signature (1) for function

Hello R-Team, May you help me to post a 'S4-creating Package Problem'? Thanks already now for supporting. The problem sounds like: Hello R forum, while compiling my R-package these 'Warnings' occur: ... Warnung in matchSignature(signature, fdef, where) : in the method signature for function "plot" no definition for class: "prediction" Warnung in

In my package, I create a new method for plot with the following signature: setMethod("plot", signature(x="marrayNorm", y="formula"), plot.ma) where marrayNorm is a class defined in the marray package. After building and installing my package, I get the following warnings when I load my package (with library(maVis)): Warning messages: 1: In the method signature

The coxme package has a ranef() method, as does lme4. I'm having trouble getting them to play together, as shown below. (The particular model in the example isn't defensible, but uses a standard data set.) The problem is that most of the time only one of lme4 or coxme will be loaded, so each needs to define the basic ranef function as well as a method for it. But when loaded together

I am currently using R 2.1.1 under Windows and I do not seem to be able to load the current versions of lme4/Matrix. I have run 'update.packages.' I understand this is still experimental software but I would like access to a working version. Thanks. Chuck R Output: > library(lme4) Loading required package: Matrix Error in lazyLoadDBfetch(key, datafile, compressed, envhook) :

I am encountering segfaults when checking the lme4 package on an Athlon64 system if I use the acml blas. R was built as a 64-bit application using the GCC 4.0.3 compiler suite including gfortran. The version of acml is 3.5.0 gfortran64. I do not encounter the segfaults when I compile R with R's built-in BLAS. The errors occur in the first example in lme4 in a call to lmer. It looks like

Hi all, I am having issues comparing models with lmer. As an example, when I run the code below the model summaries (AIC, BIC, loglik) differ between the summary() and anova() commands. Can anyone clear up what's wrong? Thank you! Darren Ward library(lme4) data(sleepstudy) fm1<-lmer(Reaction ~ Days + (1|Subject), sleepstudy) summary(fm1) fm2<-lmer(Reaction ~ Days +

Hello all, Using Ubuntu 9.04 and R 2.8.1. For a project I need to use the Zelig package, which in turn wants to use the lme4 package. When trying to use Zelig and it tries to its required packages I get the following error message. Error in dyn.load(file, DLLpath = DLLpath, ...) : function 'cholmod_start' not provided by package 'Matrix' Error in loadModelDeps(model) :

Hi R community! I've fitted three mixed-effects regression models to a thousand bootstrap samples (case-resampling regression) using the lme4 package in a custom-built for-loop. The only output I saved were the inferential statistics for my fixed and random effects. I did not save any output related to the performance to the machine learning algorithm used to fit the models (REML=FALSE).

Being rather inept at all things Linux, I paid a consultant to fix some things on my computer,? Unforntately, good help is hard to find.? Here's where I am: ? ... Loading required package: Matrix Loading required package: lattice Error in dyn.load(file, DLLpath = DLLpath, ...) : ? function 'cholmod_l_start' not provided by package 'Matrix' Error: package/namespace load failed

With > R.version.string [1] "R version 2.15.0 alpha (2012-03-14 r58748)" trying to trace a method using the 'signature' argument fails rather than enabling the trace: > trace(initialize, signature="ANY") Error in matchSignature(signature, fdef, where) : trying to match a method signature of class ?signature?; expects a list or a character vector --

Hi, I just installed version 2.11.1 on my Mac OS X 10.5.2. When I try running R from my xterm, I get the following error: Error in loadNamespace(name) : there is no package called 'lme4' Fatal error: unable to restore saved data in .RData I am returned to the terminal prompt and can not run R. I can open this version of R from the R console and tried installing the lme4 source

I am trying to get a script to start automatically when I run the GUI version of R version 1.9.0, started from a .bat file (WINDOWS), but I'm getting strange errors In version 1.8.1 I was able to run a script automatically by copying the script into the file .Rprofile and running Rgui from a .bat script, but in version 1.9.0 I'm getting errors like: Error in inherits(x,