similar to: Updated version of gdata, gtools, gplots and gmodels

Full_Name: Ebi Hal Version: R-2.7.2-1 OS: Fedora core 9 Submission from: (NULL) (129.215.170.238) I tried to install gplots by running R> install.packages("gplots") but the process failed while installing "gtools" with the following error message: * Installing to library '/usr/lib64/R/library' * Installing *source* package 'gtools' ... ** libs gcc -m64

Hello, I've recently transitioned to using R in Linux. My OS/installation versions are: $ Red Hat Enterprise Linux AS release 4 (Nahant Update 6) $ Linux lx-chgmqsd05 2.6.9-67.0.1.ELsmp #1 SMP Fri Nov 30 11:57:43 EST 2007 x86_64 x86_64 x86_64 GNU/Linux I am trying to create a repository of packages under ~/R/library which I've created since I do not have admin access on my system. From my

Hello, I've recently transitioned to using R in Linux. My OS/installation versions are: $ Red Hat Enterprise Linux AS release 4 (Nahant Update 6) $ Linux lx-chgmqsd05 2.6.9-67.0.1.ELsmp #1 SMP Fri Nov 30 11:57:43 EST 2007 x86_64 x86_64 x86_64 GNU/Linux I am trying to create a repository of packages under ~/R/library which I've created since I do not have admin access on my system. From my

Hello, I have a question as to how the syntax for glht(package multcomp) and estimable (gmodels) works, since I'm not getting everything from the documents I've googled so far, especially with models with 2nd order terms. A modestly complex model: 2-way anova with one continuous covariate, no random effects(and no repeated measures) to keep it modestly complex: Y = treatmentgroup + sex

Announcing gplots 2.5.0 --------------------------------- gplots provides additional plotting functions, including several enhanced versions of base R functions. Provided functions include: balloonplot, bandplot, barplot2, boxplot.n, colorpanel, heatmap.2, hist2d, lowess, ooplot, overplot, plot.lm2, plotCI, plotmeans, qqnorm.aov, residplot, rich.color, sinkplot, smartlegend, space,

Announcing gplots 2.5.0 --------------------------------- gplots provides additional plotting functions, including several enhanced versions of base R functions. Provided functions include: balloonplot, bandplot, barplot2, boxplot.n, colorpanel, heatmap.2, hist2d, lowess, ooplot, overplot, plot.lm2, plotCI, plotmeans, qqnorm.aov, residplot, rich.color, sinkplot, smartlegend, space,

Dear, I've installed the following R version on HP compaq 6710 b under Fedora 8: > version _ platform i386-redhat-linux-gnu arch i386 os linux-gnu system i386, linux-gnu status major 2 minor 6.2 year 2008 month 02 day 08 svn rev 44383 language R version.string R version 2.6.2 (2008-02-08) When I try to install some R packages I receive the following message: [root at localhost

Hi, I want to test for a contrast from a regression where I am regressing the columns of a matrix. In short, the following. X <- matrix(rnorm(50),10,5) Y <- matrix(rnorm(50),10,5) lm(Y~X) Call: lm(formula = Y ~ X) Coefficients: [,1] [,2] [,3] [,4] [,5] (Intercept) 0.3350 -0.1989 -0.1932 0.7528 0.0727 X1 0.2007 -0.8505 0.0520

gregmisc 0.10.1 --------------- gregmisc 0.10.1 is now available at ftp://cran.r-project.org/incoming/ and will move to the regular contributed packages location (http://cran.r-project.org/src/contrib/PACKAGES.html#gregmisc) as soon as the CRAN administrators get caught up. Recent Changes --------------- Version 0.10.1 - Fixed bug in textplot() reported by Kevin Wright <kevin.d.wright at

gregmisc 0.10.1 --------------- gregmisc 0.10.1 is now available at ftp://cran.r-project.org/incoming/ and will move to the regular contributed packages location (http://cran.r-project.org/src/contrib/PACKAGES.html#gregmisc) as soon as the CRAN administrators get caught up. Recent Changes --------------- Version 0.10.1 - Fixed bug in textplot() reported by Kevin Wright <kevin.d.wright at

Sorry if this answer was already given, or if I miss the point, but did you have a look to "lowerTriangle" and "upperTriangle" functions in the "gdata" package ? # example # A<-matrix(rnorm(9),3,3) # B<-B<-matrix(NA,dim(A)[1],dim(A)[2]) # lowerTriangle(B)<-lowerTriangle(A) # upperTriangle(B)<-lowerTriangle(A) # diag(B)<-diag(A) Hope this helps,

Dear List, I'm trying to generate a simple heatmap that has each row and column separated by a black line. However, for some reason this only happens for the first and last color. The middle color in my colorpanel() command has an addition horizontal and vertical line that I would like to get rid off. Any suggestions? #my code below my.matrix <- cbind(func.1 =

Full_Name: Thomas R Famula Version: 2.2.1 OS: Linux - fedora core 4 Submission from: (NULL) (169.237.28.28) Sorry to bother - I hope this is a simple fix. Here is the set of error messages I recieved in trying to install the "gmodels" package. I typed in "install.packages(c("gmodels"))" as the root and recieved the following series of replies:

Dear R-list members, I have just downloaded R version 2.11.0. Then I installed package gdata. At the end of the installation, a warning message said that package gtools could not be found. Package gdata was, after the installation, included in the "Package Index" in the help files. Messages during installation (which was made through the menu Packages / Instal package(s), choosing the

Dear All, I'm having a problem using functions in the gmodels library on an object of class mer from the lmer package. Code for a reproducible example is below. # Load lme4 library and sample data library(lme4) library(faraway) library(gmodels) data(penicillin) # Fit a linear mixed effects model fit4 <- lmer(yield ~ treat + (1|blend), penicillin) # Extract confidence intervals

Dear Friends, Please note that in the following CI lower > CI higher: > require(lmer) > require(gmodels) > fm2 <- lmer(Reaction ~ Days + (1|Subject) + (0+Days|Subject), sleepstudy) > ci(fm2) Estimate CI lower CI upper Std. Error p-value (Intercept) 251.66693 266.06895 238.630280 7.056447 0 Days 10.52773 13.63372 7.389946 1.646900

Library gmodels include a function CrossTable that is useful for crosstabulation. In the help, it is indicated that one can call this function as CrossTable(data), were data is a matrix. However, when I try to use this option, it doesn't help. Any idea? Is there a bug? Thanks for your help. Prof. Albert Sorribas Grup de Biomatem?tica i Bioestad?stica Departament de Ci?ncies M?diques B?siques

Dear r-helpers, I sent a cc of a recent message about a problem with ci.lmer() in the gmodels package to the author (Gregory R Warnes), and the message bounced. If the author or someone else is maintaining this package or this function, would you kindly supplement the author's name and/or address with a current maintainer and/or provide a current email address?

Is the code below showing a bug in Crosstable()? My expectation was that the values produced by xtabs were rounded instead of truncated: library(gmodels) abc <- c("a", "a", "b", "b", "c", "c") def <- c("d", "e", "f", "f", "d", "e") wgt <- c(0.8, 0.6, 0.4, 0.5, 1.4, 1.3)

Hi R-users, I have the following problem with CrossTable function within ?gmodels? package: the output of the function (format ?spss? and asresid=T) can not be stored within another object. For example: >library(gmodels) >data(infert, package = "datasets") > CrossTable(infert$education, infert$induced)->aa # the function prints everything ok on the screen > aa # works