similar to: Anyone using torque/pbs/munge?

Hi, The problem is most likely, you need to call a R CMD BATCH with your arguments and the R-script inside of a shell script that you submit to your qsub. Unfortunately we don't use qsub anymore so can't test it, but it should be as follows: R-script eg. test.R: > ##First read in the arguments listed at the command line > args=(commandArgs(TRUE)) > > ##args is now a list of

Mark, You might really want to compile torque from source (into an RPM if you'd like) and redistribute that. Every version is a little wonky and those of us that use(d) it often will poke around until we find a version / patch-set that makes us happy and stick with that for a bit. It's not an exact science and newer / higher versions are not always better. As for the downgrade comment:

On 05/27/2015 09:07 AM, m.roth at 5-cent.us wrote: > Hi, folks, > > The other admin updated torque without testing it on one machine, and > we had Issues. The first I knew was when a user reported qstat > returning > socket_connect_unix failed: 15137 > socket_connect_unix failed: 15137 > socket_connect_unix failed: 15137 > qstat: cannot connect to server (null)

On Wed, May 27, 2015 9:46 am, m.roth at 5-cent.us wrote: > Johnny Hughes wrote: >> On 05/27/2015 09:07 AM, m.roth at 5-cent.us wrote: >>> Hi, folks, >>> >>> The other admin updated torque without testing it on one machine, >>> and >>> we had Issues. The first I knew was when a user reported qstat >>> returning >>>

On Wed, May 27, 2015 10:55 am, Zachary Giles wrote: > Mark, You might really want to compile torque from source (into an RPM > if you'd like) and redistribute that. Every version is a little wonky > and those of us that use(d) it often will poke around until we find a > version / patch-set that makes us happy and stick with that for a bit. > It's not an exact science and

Johnny Hughes wrote: > On 05/27/2015 09:07 AM, m.roth at 5-cent.us wrote: >> Hi, folks, >> >> The other admin updated torque without testing it on one machine, and >> we had Issues. The first I knew was when a user reported qstat >> returning >> socket_connect_unix failed: 15137 >> socket_connect_unix failed: 15137 >> socket_connect_unix

Dear Xen users. Have anyone tried to integrate Xen with Torque resource management system? Could you please help me with an advice for a system I''m developing that relies on torque. Let me describe the system first. The part of the system that talks with torque should request a certain amount on nodes of a cluster and launch there a virtual machine instance (one vm instance per host).

This sounds like an operating system specific question, in that "submit the R script to a PBS HPC scheduler" would be the kind of action that would run R with very different environment variables and possibly different access credentials than your usual interactive terminal. A thorough reading of the "Installation and Administration Guide" and some study of your HPC

Hi, folks, The other admin updated torque without testing it on one machine, and we had Issues. The first I knew was when a user reported qstat returning socket_connect_unix failed: 15137 socket_connect_unix failed: 15137 socket_connect_unix failed: 15137 qstat: cannot connect to server (null) (errno=15137) could not connect to trqauthd Attempting to restart the pbs_server did the same.

Dear all, please could you advise me on the following : I've written a R script that reads 3 arguments from the command line, i.e. : " args <- commandArgs(TRUE) TUMOR <- args[1] GERMLINE <- args[2] CHR <- args[3] ". when I submit the R script to a PBS HPC scheduler, I do the following (below), but ... I am getting an error message. (I am not posting the error message,

Upgraded a RAID. Copied everything from backup. And then my manager said I had to encrypt the drive. I've done that, and made the filesystem, but I can't mount it. CentOS 6. I have the entry in /etc/crypttab, and a key in /etc/crypt.pw, and the luks UUID in /etc/fstab. I cannot find the command that tells it to create the device in /dev/mapper from the info in /etc/crypttab. Clues for

Got a HBS (y'know, Honkin' Big Server, one o' them technical terms), a Dell 720 with two Tesla GPUs. I updated the o/s, 6.5, and I cannot get the GPUs recognized. As a last resort, I d/l NVidia's proprietary driver/installer, 325, and it builds fine... I've yum removed the kmod-nvidia I had on the system, nouveau is blacklisted, and when I reboot, lsmod shows me nvidia loaded,

Dear Experts, I know there are many HPC (high performance computing) experts on this list. I'd like to ask your advise. Almost two decades ago I chose to go with OpenPBS (turned down condor and other alternatives for whatever reason) for clusters and number crunchers I support for the Department at the university. It turned out to be not bad, long lived choice. At some point I smoothly

Hey Valeri - IIRC, midway (and maybe midway2?) use slurm for job scheduling. I don't know how many of your faculty use both your nodes and midway, but maybe consolidating on to a single scheduler would be easier for them? (also, it's been a while ... hi! ? ) Richard -----Original Message----- From: CentOS <centos-bounces at centos.org> On Behalf Of Valeri Galtsev Sent: Friday,

https://bugzilla.samba.org/show_bug.cgi?id=5457 Summary: Add a client-side --munge-symlinks option Product: rsync Version: 3.0.3 Platform: Other OS/Version: Linux Status: NEW Severity: enhancement Priority: P3 Component: core AssignedTo: wayned@samba.org ReportedBy: matt@mattmccutchen.net

Leon Fauster wrote: >> Am 20.06.2017 um 16:53 schrieb m.roth at 5-cent.us: >> >> Upgraded a RAID. Copied everything from backup. >> >> And then my manager said I had to encrypt the drive. >> >> I've done that, and made the filesystem, but I can't mount it. >> >> CentOS 6. >> I have the entry in /etc/crypttab, and a key in

> Am 20.06.2017 um 16:53 schrieb m.roth at 5-cent.us: > > Upgraded a RAID. Copied everything from backup. > > And then my manager said I had to encrypt the drive. > > I've done that, and made the filesystem, but I can't mount it. > > CentOS 6. > I have the entry in /etc/crypttab, and a key in /etc/crypt.pw, and the > luks UUID in /etc/fstab. I cannot

> Am 20.06.2017 um 17:12 schrieb m.roth at 5-cent.us: > > Leon Fauster wrote: >>> Am 20.06.2017 um 16:53 schrieb m.roth at 5-cent.us: >>> >>> Upgraded a RAID. Copied everything from backup. >>> >>> And then my manager said I had to encrypt the drive. >>> >>> I've done that, and made the filesystem, but I can't

We're running the current version of torque. On our small supercomputer (an SGI), no updates to torque since July, but just recently - someone may be trying something new - /var/log/messages is on-and-off being spammed with Oct 15 18:02:04 servername pbs_mom: LOG_INFO::create_job_cpuset, creating cpuset for job 1971[656].york.cit.nih.gov: 1 cpus (12), 1 mems (1) and I mean thousands of lines.

Hello all; I'm trying to execute parallel jobs trough library snow on a cluster built through torque/PSB. I'm succesfully obtaining the cluster with: >system("cat $PBS_NODEFILE > cluster.txt") >mycluster <- scan(file="cluster.txt",what="character") >cl <- makeSOCKcluster(mycluster) The only problem, at the moment, is that if I use