Displaying 20 results from an estimated 200 matches similar to: "Issue installing Matrix Package"
2014 Oct 14
1
[Fwd: Re: AIX-5.3 Issue installing Matrix Package]
Hi,
Please help.
Regards,
Shivali
---------------------------- Original Message ----------------------------
Subject: Re: [Rd] AIX-5.3 Issue installing Matrix Package
From: shivali at mail.ncmrwf.gov.in
Date: Wed, October 8, 2014 3:31 pm
To: "Ei-ji Nakama" <nakama at ki.rim.or.jp>
Cc: "Martin Maechler" <maechler at stat.math.ethz.ch>
2008 Jun 08
1
R CMD CHECK WARNING inappropriate for S4 method?
The package 'graph' defines classes graph and graphNEL (extending
graph) and a union,graph,graph-method. These are all exported and
fully documented.
The package 'GSEABase' Imports: graph and importClassesFrom(graph,
graphNEL). GSEABase defines methods on union for its own classes (not
graph / graphNEL), and has exportMethods(union).
union,graph,graph-method is not used in
2006 Jan 05
1
Generic Functions
Hi,
I've been using the package "graph" in the BioConductor assortment and
writing some functions based on its classes. My question is not specific to
this package or BioConductor (I think), but it serves as a useful example.
I recently wanted to look at the code for the function "edgeMatrix" for the
class "graphNEL".
Usually I would type
> func.foo
and
2012 Nov 01
1
GraphNEL object retrieve edgenumber from acc() or is it list of lists?
Hello everyone,
Im working with graphNEL object and want to extract all the nodes which
have adjacent nodes with at least 20 nodes in between them.
acc(graph, graphnodes) obviously provides a list for the accessable
nodes of every node from a node and a number of the edges between them.
Like this:
$`hsa:8379`
hsa:100131844 hsa:10393 hsa:246184 hsa:29882 hsa:29945
1
2009 Jun 24
0
Matrix vignette error in June 24 RC
I am getting the following problem with make check-all on the June 24
rc. I realize I could probably fix it by installing/setting a path to
the sty file, but I don't remember having to do that for make check-all
in the past.
Paul Gilbert
___________
....
checking package 'Matrix'
* checking for working pdflatex ... OK
* using log directory
2016 Jan 04
2
R, AIX 64-bit builds - trying to understand root cause for message: "Error: Line starting 'Package: tools ...' is malformed!"
The bulk is on my forums - the final post for today is:
Results to date:
A. It looks like I am going to need a newer compiler for C - xlc/xlC V11
apparently does not understand this code:
"/data/prj/cran/R-3.2.3/src/main/memory.c", line 2149.31: 1506-046 (S)
Syntax error.
I will have to check if R-devel has different code before asking for
assistence.
+2139 #ifdef
2010 May 07
0
ACL madness
Hello list,
I'm having a "fun" time trying to figure out my ACL problems.
I've gone through the default ACL settings and the mask settings on
the filesystem to ensure that the user I am using does indeed have
access to the filesystem that is being shared out.
My issue is that I am unable to overwrite a file that already exists
with another file of the same name. I get the
2010 Dec 01
1
Graph in R with edge weights
Can you please show code example, how to draw graph with some nodes and
edges, but with weights. I only found here
http://www.bioconductor.org/packages/release/bioc/vignettes/Rgraphviz/inst/doc/Rgraphviz.pdf-
Using edge weights for labels, but...
Here an example:
> library("graph"); library(Rgraphviz)
> myNodes = c("s", "p", "q", "r")
>
2011 Feb 13
1
RCytoscape setPosition error
Hi
Can some one please point out where i am wrong.
I am trying to position set of nodes column-wise in cytoscape using
RCytoscape
A----D
B----E
C----F
-------------------
g <- new ('graphNEL', edgemode='undirected')
cw <- CytoscapeWindow ('smallExample', graph=RCytoscape::makeSimpleGraph())
layout (cw, 'jgraph-spring')
redraw(cw)
nodesFr = c('A',
2006 Jul 06
1
Rgraphviz: How to control the colours of edges in a graph
Using Rgraphviz, I draw the undirected graph with vertices A,B,C and D and edges A:B, B:C, C:D, D:A, A:C. I want the vertices A and B to be red and C and D to be blue. The problem is the following: I want the edges A:B and B:C to be green and the edges C:D and C:A to be yellow, while the edge A:C can have the default colour black. I assume that I have to specify this using the edgeAttrs-argument
2009 Feb 16
1
Newbie - how do I debug a crash of RGUI.EXE
Hi-
I'm running Vista64 Business and trying to use a package called
RGraphViz. Unfortunately, when I try to plot a graph using this package
it causes RGUI.EXE to crash. This package has no problem working in
WinXP 32-bit.
Is there any way to get useful information as to why it crashes?
Here's my commands:
> library(Rgraphviz)
Loading required package: graph
Loading required
2008 Jan 28
2
New package: gRain - gRAphical Independence Networks
Dear useRs
I have uploaded a new package, gRain, for propability propagation in graphical independence networks; sometimes also called probabilistic expertsystems and Bayesian networks.
Regards
S?ren H?jsgaard
_______________________________________________
R-packages mailing list
R-packages at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-packages
2008 Jan 28
2
New package: gRain - gRAphical Independence Networks
Dear useRs
I have uploaded a new package, gRain, for propability propagation in graphical independence networks; sometimes also called probabilistic expertsystems and Bayesian networks.
Regards
S?ren H?jsgaard
_______________________________________________
R-packages mailing list
R-packages at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-packages
2012 Dec 05
0
[Bug 9466] New: GPFS ACLs are not copied by rsync when copying between two GPFS filesystems
https://bugzilla.samba.org/show_bug.cgi?id=9466
Summary: GPFS ACLs are not copied by rsync when copying between
two GPFS filesystems
Product: rsync
Version: 3.0.9
Platform: All
OS/Version: All
Status: NEW
Severity: enhancement
Priority: P5
Component: core
AssignedTo: wayned at
2012 Jan 04
1
GPFS for mail-storage (Was: Re: Compressing existing maildirs)
Great information, thank you. Could you remark on GPFS services hosting mail storage over a WAN between two geographically separated data centers?
----- Reply message -----
From: "Jan-Frode Myklebust" <janfrode at tanso.net>
To: "Stan Hoeppner" <stan at hardwarefreak.com>
Cc: "Timo Sirainen" <tss at iki.fi>, <dovecot at dovecot.org>
Subject:
2009 Apr 18
0
igraph 0.5.2
igraph is a package for graphs/networks. It has a C core and
uses a simple and fast graph representation allowing millions
of vertices and edges.
LINKS
Release notes for the 0.5.2 version:
http://igraph.sourceforge.net/relnotes-0.5.2.html
Release notes for the 0.5.1 version:
http://igraph.sourceforge.net/relnotes-0.5.1.html
Complete list of changes:
http://igraph.sourceforge.net/news.html
The
2009 Apr 18
0
igraph 0.5.2
igraph is a package for graphs/networks. It has a C core and
uses a simple and fast graph representation allowing millions
of vertices and edges.
LINKS
Release notes for the 0.5.2 version:
http://igraph.sourceforge.net/relnotes-0.5.2.html
Release notes for the 0.5.1 version:
http://igraph.sourceforge.net/relnotes-0.5.1.html
Complete list of changes:
http://igraph.sourceforge.net/news.html
The
2011 Apr 09
3
Converting edgelist to symmetric matrix
Hi,
I have network data in the form of a couple of edgelists containing weights in
the format "x,y,weight" whereby x represents row header and y represents column
header. All edgelists are based on links among 634 nodes and I need to convert
them into a 634*634 weighted matrix.
I searched for online help using possible keywords I know, but I could not find
a clue how to do this in
2010 May 06
2
Problem with nested functions - functions nested too deeply in source code
Hi all!
I¹m just implementing the Ullmann¹s algorithm for searching subgraph
isomorphisms in graphNEL objects. The algorithm is running with smaller
graphs, but when I¹m calling it i get an R error message saying that
functions are nested too deeply in source code. I found out that the problem
is in the so called refinement procedure of the algorithm which consists of
10 different functions,
2007 Feb 13
4
Advice on visual graph packages
Hey, all. I'm looking for packages that are good at two things
1) Drawing directed graphs (i.e nodes and edges), both with single
and double headed arrows, as well as allowing for differences in line
width and solid versus dashed. Note: I've tried Rgraphviz here, but
have run into some problems (which seem fixable and I may go with it
in the end), and it doesn't satisfy need