similar to: R-devel/Linux x64/Sun Studio 12: Problem with Matrix

I am trying to compile R on Linux using SunStudio. Configure flags are mostly as suggested in the R install guide. CC=/opt/sun/sunstudio12.1/bin/suncc CFLAGS="-g -xc99 -xlibmil -xlibmieee" MAIN_CFLAGS=-g SHLIB_CFLAGS=-g CPPFLAGS="-I. -I/opt/sun/sunstudio12.1/prod/include -I/opt/sun/sunstudio12.1/prod/include/cc" CPPFLAGS+="-I/opt/sun/sunstudio12.1/prod/include/cc/sys

Thank you Martyn, I am one step closer. Using R-patched, configure was successful. However, make exited with an error. Configure summary: Installation directory: /usr/local C compiler: /opt/sun/sunstudio12.1/bin/suncc -g -O -xc99 -xlibmil -m32 -xlibmieee -nofstore Fortran 77 compiler: /opt/sun/sunstudio12.1/bin/sunf95 -g -O -libmil -m32 -nofstore C++ compiler:

Hello, I''m having problems compiling Ruby 1.8.5 on a 64-bit Intel machine running Solaris 10 U3. I''m using Sun Studio 12 for building an optimized package for our company. We''re not interested in coolstack (from Sun used with GCC). Any help below would be appreciated: root@host # uname -an SunOS host 5.10 Generic_125101-08 i86pc i386 i86pc Solaris root@host # isainfo

Apologies if this is not the best list on which to ask for help. I have compiled R 2.6.0 using Sun Studio 12 compilers. I can install most CRAN and bioconductor packages that I need, with the exception of RSQLite. Unfortunately this is critical for other packages that I need. I have tried to compile it using R CMD INSTALL to generate a config.log file. I don't know how to fix the reported

Hi, I'm working on a server with a sparcv9 chip using SunOS 5.9 Generic May 2002. The compilers are the Sun Studio 12 compilers. I'm trying to build a 64-bit version of R-2.6.1, and while the configure script runs, the make does not. Here are the options I set in config.site: ________________________________________________________________________ _ R_PAPERSIZE=letter CC="cc

Hi all, I have trouble to compile Matrix packages on Solar10 x86-64 with Sun compilers. I saw some postings on this but am not sure how to solve this problem. It is becoming critical as I cannot install biocLite() because of its dependency on Matrix. Could you direct me how to resolve the issue? Thanks in advance! Dongseok R version 2.8.1 (2008-12-22) Copyright (C) 2008 The R Foundation for

Dear all, The current version of my RNiftyReg package is failing to compile on CRAN's Solaris testbed, but I don't have access to a Solaris system to debug on, and Googling the error hasn't been very helpful. The error is CC -library=stlport4 -I/home/ripley/R/cc/include -DNDEBUG -DNDEBUG -DRNIFTYREG -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -nofstore -c niftyreg.cpp

Hi, we have installed R-2.8.1 using the current pgi compiler (8.0.2) for AMD64 on a SLES9 system. When I try to install "Matrix" everything is fine until the last step. make[1]: Leaving directory `/tmp/R.INSTALL.TW3399/Matrix/src/AMD' pgCC -L/usr/lib64 -L/usr/X11R6/lib64 -pgf90libs -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o

I would like to Build R-2.5.1 on OpenSUSE 10.2 using the SunStudio 12 compilers(http://developers.sun.com/sunstudio/index.jsp) R builds and passes make check fine without optimising. However, when I try to compile with optimisation turned on (-fast) the build gets stuck in an infinite loop at the following point: Sun_Studio/sunstudio12/bin/cc -m64 -shared -Kpic -m64 -fPIC -o grDevices.so

64-bit R-2.12.0 was installed on Sun SPARC Solaris 10. Compiler used is solstudio12.2. Attached is the configure script. I then tried to install a recommended package called Matrix. The compilation failed with the following messages, ....... CC -library=stlport4 -G -L/opt/csw/lib/sparcv9 -L/opt/solstudio12.2/prod/lib/v9 -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o

Hi all. I've recently uploaded a package (bnlearn) to CRAN. It builds fine on both Linux (32 and 64 bit) and Windows, but fails on MacOSX ix86 because of C90 vs C99 issues: http://www.r-project.org/nosvn/R.check/r-patched-macosx-ix86/bnlearn-00install.html Since I've no MacOSX machine at hand, I would like to ask you: why is C99 not the default for gcc on MacOSX ix86? Is it safe to

Dear R user, I try to build R-2.8.1 on SunOS 5.9, and use following command: CC="cc -xarch=v9" CFLAGS="-xO5 -xlibmil -dalign" F77="f95 -xarch=v9" FFLAGS="-xO5 -xlibmil -dalign" CXX="CC -xarch=v9" CXXFLAGS="-xO5 -xlibmil -dalign" FC="f95 -xarch=v9" FCFLAGS="-xO5 -xlibmil

Hi thanks for your posts so far. Since what I had assumed was a 32 bit kernel which I compiled didn''t work, I religiously set out on compiling a 64 bit version as my system is currently booted in 64 bit mode. I installed SUNStudio12 on the system and set the SPRO_VROOT to point towards it and when I do a make all in usr/src directory, I get the following error when make cwds and runs in

Hi All, I am having some problems with my R compile and matrix.c My config setings are:- setenv CC "cc -xarch=amd64" setenv F77 "f95 -xarch=amd64" setenv CXX "CC -xarch=amd64" setenv CFLAGS "-xO5 -xlibmil -dalign" setenv FFLAGS "-xO5 -xlibmil -dalign" setenv CXXFLAGS "-xO5 -xlibmil -dalign" setenv SHLIB_CXXLDFLAGS -lCstd setenv LDFLAGS

Hi, I am compiling R2.8.1 on a Sun M4000 machine with Solaris 10. I am using Sun Studio 12. I get the following error: cc -xtarget=native64 -G -L/usr/sfw/lib/sparcv9 -L/opt/csw/lib/sparcv9 -o grDevices.so chull.o devNull.o devPicTeX.o devPS.o devQuartz.o init.o mkdir ../../../../library/grDevices/libs Warning in solve.default(rgb) : unable to load shared library

Full_Name: Jeremy Fox Version: 1.5.0 OS: Solaris 8, 64 bit Submission from: (NULL) (171.64.232.63) I am compiling R under Solaris and the compilation stops at this point. The problem only happens when I link in readline. The R binary is actually compiled and readlne works. The main problem with the compiled binary (other than that all the supporting files were not correctly installed) is that

Full_Name: rodney sparapani Version: 1.9.0 OS: Solaris 9 Submission from: (NULL) (141.106.120.97) I'm following the instructions for the Sun Forte compiler. I had success with 1.8.1 so I think the compiler settings are correct (config.site): CC="cc -xarch=v8plusa" CFLAGS="-xO5 -xlibmil -dalign" F77="f95 -xarch=v8plusa" FFLAGS="-xO5

Hello, Apologies for the post here. I have read the R-Admin (learned a lot!) and searched the web for days, but still fail at compiling R on my Ultra 20 running solaris 10 x86 1/06. This is the tail of './configure' output: ..... checking for dlopen in -ldl... yes checking readline/history.h usability... no checking readline/history.h presence... no checking for readline/history.h... no

Hi, Could you help me to install the rgl package on Solaris 10 x86? I tried and got the following error messages. When I compiled my R as 64bit, I used the SUN ProW compilers. However, gcc seems to being used below as well as missing some information. Thank you in advance, Dongseok > install.packages("rgl") --- Please select a CRAN mirror for use in this session --- *

Invocation of randomForest() using the iris example in the help file crashes R with a segmentation fault. This happens on all of our ultraSPARC machines running Solaris 2.7. We're using R-1.4.1, compiled using Sun cc and f77 and the flags: CC=cc CFLAGS="-xO5 -xlibmil -dalign" FC=f77 FFLAGS="-xO5 -xlibmil -dalign" "make check" runs withour errors, and R has been