similar to: install R package on Unix cluster

Hi R-users, I have a problem running my R code on a Linux cluster. What I did was write a .pbs file to instruct the cluster on what to do and how: #!/bin/sh #PBS -m ae #PBS -M uqlcatta@uq.edu.au #PBS -A uq-CSER #PBS -N job1_lollo #PBS -l select=1:ncpus=1:NodeType=fast:mem=8GB #PBS -l walltime=999:00:00 cd $PBS_O_WORKDIR source /usr/share/modules/init/bash module

Dear sir, I want to submit R batch jobs (e.g. 5) under the linux cluster by the script file "do_mul". The script file "do_mul" " #!/bin/bash export var for var in $(seq 1 5) do qsub -v var do_test done exit 0 " Through "do_mul", 5 "do_test" script files are submitted to the cluster. The script file "do_test": " #!/bin/bash -l

Hello: Anybody knows how to run Rmpi through PBS (Portable Batch System) on a cluster computer. I'm using a supercomputer which require to submit jobs to PBS queue for dispatching. I tried use mpirun in my PBS script. But all my Rslaves are spawned to the same node. This is not desired. Any suggestions are welcome! Thanks in advance. ======================================== Shengqiao Li

Dear Experts, I know there are many HPC (high performance computing) experts on this list. I'd like to ask your advise. Almost two decades ago I chose to go with OpenPBS (turned down condor and other alternatives for whatever reason) for clusters and number crunchers I support for the Department at the university. It turned out to be not bad, long lived choice. At some point I smoothly

Dear all, please could you advise me on the following : I've written a R script that reads 3 arguments from the command line, i.e. : " args <- commandArgs(TRUE) TUMOR <- args[1] GERMLINE <- args[2] CHR <- args[3] ". when I submit the R script to a PBS HPC scheduler, I do the following (below), but ... I am getting an error message. (I am not posting the error message,

Hi I am having difficulty getting the right format for a lattice plot I am trying to produce. Here is a pic of the plot as I get it now http://i235.photobucket.com/albums/ee37/scotrivers/lattice_plot01.jpg and here is the code I am using: RN<-read.csv("N:/data.dat",header=T) DATA<-RN[is.element(RN$age,0:3),] #select data on age

This sounds like an operating system specific question, in that "submit the R script to a PBS HPC scheduler" would be the kind of action that would run R with very different environment variables and possibly different access credentials than your usual interactive terminal. A thorough reading of the "Installation and Administration Guide" and some study of your HPC

Wayne, Hello, I saw a post of yours out on samba.org and was wondering if you might be able to shed a little light on a problem I'm having with rsync. My rsync source files are all off of nfs mounts and the destination directories are all nfs mounts. The owner and groups all end up as nobody/nobody on the destination, despite being all sorts of owners and groups on the source. Have you

Background: I administer a cluster of RedHat EWS 3U4 Linux workstations at a university. I built R 2.1.0 from source: ./configure \ --prefix=/sscc/opt/R-2.1.0 \ --with-blas=no \ 2>&1 \ | tee NUInstall.configure R is now configured for i686-pc-linux-gnu Source directory: . Installation directory: /sscc/opt/R-2.1.0 C compiler:

Hi, The problem is most likely, you need to call a R CMD BATCH with your arguments and the R-script inside of a shell script that you submit to your qsub. Unfortunately we don't use qsub anymore so can't test it, but it should be as follows: R-script eg. test.R: > ##First read in the arguments listed at the command line > args=(commandArgs(TRUE)) > > ##args is now a list of

Hi Chris, Thanks for your response! Wu Wei made this happen! and he is organizing LLVM social in Shanghai, Hang Zhou and Shen Zhen. I hope one day there is LLVM developer meeting in China :) 在 2018年05月29日 14:13, Chris Lattner 写道: > This is really great, thank you for getting this off the ground! > > -Chris > > >> On May 28, 2018, at 9:42 PM, Leslie Zhai <lesliezhai at

Hi all, We have been fighting with telco for a entire week. Today they came here with a LITE3000 to analyze what is going on. When I configure zaptel with no external clock, E1 gets aligned/synchronized with bit rate in 2048000 bps, both me and telco. span=4,0,0,ccs,hdb3,crc4 But when I configure span4 to get clock source from telco they become unsynchronized. TElco bit rate stays in

I am currently looking at putting together an Asterisk PBX system for my home office. One of the things I need is an expandable 2-line corded/cordless phone system. If I wasn't using Asterisk, I'd be getting one of these AT&T systems with 2 extra handsets. http://telephones.att.com/attui/shop/product_detail.cfm?itemID=ad53fe08-495e-41b6-b390-3aaa1c84cc40 So, the question is,

(Moving from offlist discussion.) I''m interested in opinions... Assume there are four single vcpu domains A, B, C, D, running on a 2-CPU physical machine. We wish to test for time skew on domain A. Assuming B, C, and D are all running some workload that attempts to fully saturate the (single) cpu. 1) Should the affect on domain A be essentially the same regardless of what load

Hi, I had originally posted regarding an error when trying to install package - GenABEL - it has now become clear that R is not able to connect to the net. Below are a couple of things I've tried with the resulting errors I am running R 2.6.2 on Linux e15 X86 How can I fix this? Thank you! 1) download.file("http://www.nytimes.com", destfile<-tempfile()) Error: trying URL

在 2018年05月29日 14:58, mayuyu.io 写道: > Any hint on the date of LLVM Social ShangHai? Wu Wei scheduled July 1th http://hellollvm.org/ > > Zhang > >> 在 2018年5月29日，14:22，Leslie Zhai via llvm-dev <llvm-dev at lists.llvm.org> 写道： >> >> Hi Chris, >> >> Thanks for your response! >> >> Wu Wei made this happen! and he is organizing LLVM social in

Hi everyone, There are a number of issues with the current name of the Clang project: * It is prone to incorrect type setting, typically as CLang, CLANG, or most commonly c̦҉̫̘̺̹̖̗͒͆͋̈̃̇߯l߲҉̷̡̰̖͈̤̺͒҆̾̚͡͝a̺̹͍̔߭͠ͅn͋́͡g̱߫̉ * The C++ compiler ends in the string "g++", which causes problems for compiler wrapper scripts * The name has been used by a kickstarter project

Dear all, I facing pbs using RODBC library. I'm working on a Linux (Ubuntu Gutsy) os, with R version 2.5.1. I've got Postgresql 8.2.5 installed with the odbc-postgresql package. I try to connect in a R session to a postgresql database using: odbcConnect(dsn="thedatabasename",uid="theuser",pwf="thepasswd",case="postgresql") I get a message error,

This is really great, thank you for getting this off the ground! -Chris > On May 28, 2018, at 9:42 PM, Leslie Zhai <lesliezhai at llvm.org.cn> wrote: > > Hi LLVM developers, > > My sincere thanks will goto Wu Wei for his great organization! > > I shared a topic " to introduce Loongson's contribution to LLVM and GCC toolchain. > > Slide:

Having some issues with a TE131 apparently causing kernel panics. This is on CentOS 5.10 with DAHDI 2.9.1 (also tried 2.9.2-rc1, no difference.) There?s also an Tracebacks are very similar to this one: https://pbs.twimg.com/media/BrdrQf3CAAE3RXQ.jpg It?s configured with FXSKS signaling and the other end is an Adtran 850, though I?ve also experienced it crossed-over to an older TE13x doing