similar to: Extracting Information from ctree

Displaying 20 results from an estimated 2000 matches similar to: "Extracting Information from ctree"

2011 Feb 17
1
missing values in party::ctree
After ctree builds a tree, how would I determine the direction missing values follow by examining the BinaryTree-class object? For instance in the example below Bare.nuclei has 16 missing values and is used for the first split, but the missing values are not listed in either set of factors. (I have the same question for missing values among numeric [non-factor] values, but I assume the answer
2010 Apr 07
1
extracting ctree() output information
Hi, I am new to R and am using the ctree() function to do customer segmentation. I am using the following code to generate the tree: treedata$Response<-factor(treedata$Conversion) fit<-ctree(Response ~ .,controls=ctree_control(mincriterion=0.99,maxdepth=4),data=treedata) plot(fit) print(fit) The variable "Response" above equals 1 if the customer responded to an offering and
2012 Jan 06
1
Please help!! How do I set graphical parameters for ploting ctree()
I'm trying to understand how to set graphical parameters for trees created with the party package.  For example take the following code:   library(party)     data(airquality)     airq <- subset(airquality, !is.na(Ozone))     airct <- ctree(Ozone ~ ., data = airq,                    controls = ctree_control(maxsurrogate = 3))     plot(airct)   My problem is, I've got a ctree that has
2010 Nov 15
1
Path to nodes in ctree package party
Hallo list, I'm wondering if there is a way to extract the path to terminal nodes in a BinaryTree object, e.g. ctree, like the function path.rpart in package rpart. Thanks, Sven
2012 Aug 23
0
party package: ctree - survival data - extracting statistics/predictors
Dear R users, I am trying to apply the analysis processed in a paper, on the data I'm working with. The data is: 80 patients for which I have survival data (time - days, and event - binary), and microarray expression data for 200 genes (predictor continuous variables). My data matrix "data.test" has ncol: 202 and nrow: 80. What I want to do is: - run recursive partitioning on
2010 Jun 21
2
ctree
Hello, This is a re-submittal of question I submitted last week, but haven't rec'd any responses. I need to extract the probabilities used to construct the barplots displayed as part of the graph produced by plot("ctree"). For example, library(party) iris.ct <- ctree(Species ~ . , data = iris) plot(iris.ct) Instead of a simple example with only 4 terminal nodes, my
2008 Jun 30
1
ctree (party) plot meaning question
I tried to use ctree but am not sure about the meaning of the plot. My.data.ct<-ctree(Resp~., data=My.data) plot(My.data.ct) My data.frame contains 88 explanatory variables (continous,ordered/unordered multistate,count data) and one response with two groups. In the plot are only two variables shown (2 internal nodes) and 3 final nodes. Does it mean that only these two variables show a
2010 Mar 09
2
ctree - party package multivariate response variables
Hi, I have a problem with ctree of party package. I have data on distribution of more than one species (about 50 species) and I would like identify the relation of this multivariate object (species distribution) with a number of explanatory variables. rs is the name of my dataframe containing the species (columns from 2 to 51) and the explanatory variables (columns 52 and 53). Rows are my
2011 Feb 16
1
caret::train() and ctree()
Like earth can be trained simultaneously for degree and nprune, is there a way to train ctree simultaneously for mincriterion and maxdepth? Also, I notice there are separate methods ctree and ctree2, and if both options are attempted to tune with one method, the summary averages the option it doesn't support. The full log is attached, and notice these lines below for
2009 Nov 20
1
ctree (party) changing font sizes in plots
When plotting Binary Trees (ctree) from the party package, is there a way to adjust the font sizes of the leaves? require(party) irisct <- ctree(Species ~ ., data = iris) plot(irisct) I want to adjust the font sizes for "Node 2", "Node 5", etc. I'd also like to be able to adjust the font sizes for the x-axis and y-axis labels of the histograms. Thanks,
2012 Oct 02
3
[Btrfs-next] bulid failure at fs/btrfs/ctree.h
Hello Josef, FYI build failure occured in fs/btrfs/ctree.h. CC fs/btrfs/super.o In file included from fs/btrfs/delayed-inode.h:30:0, from fs/btrfs/super.c:45: fs/btrfs/ctree.h:3235:1: error: expected identifier or ‘(’ before ‘<<’ token make[3]: *** [fs/btrfs/super.o] Error 1 make[2]: *** [fs/btrfs] Error 2 make[1]: *** [fs] Error 2 make[1]: Leaving directory ` make:
2010 Jul 09
2
Ctree Question
Hello, I've been using ctree and have developed a 55 node - 28 terminal solution. As can be imagined, the plot is difficult to travel down each of the major branches. I've read the help files for ctree I saw where terminal nodes can be color coded. plot(airct, type = "simple") > plot(airct, terminal_panel = node_boxplot(airct, col = "blue", + fill = hsv(2/3,
2011 Jul 29
1
R, ctree and categorical variables
I am running the ctree function in R. My data has about 10 variables, many of which are categorical. 2 of the categorical variables have many levels (one has 900 levels, another has 1,000 levels). As an example, 1 of these variables is disease code and is structured as A, B, C, ...., AA, AB, AC.... Each time i've tried to run the ctree function, including these 2
2011 Apr 27
1
ctree and survival problem
Dear all, I was intrigued by the ctree command and wanted to check it out. I first ran the demo with example(ctree) and did get the survival graphs in the end. Upon doing this with my own data and yielding a "Invalid operation on a survival time" I tried to rerun example(ctree) and now I also get "Invalid operation on a survival time" after the example runs plot(GBSG2ct)...
2012 May 17
1
ctree for suvival analysis problem
Hi All, I'm using the party package to grow conditional inference trees for survival analysis. When I used party version party_0.9-9991 everything worked well, but when I update to party_1.0-2 (due to using 64bit R), I get an error. For simplicity I will show the error I get for the example in the party documentation: ### survival analysis if (require("ipred")) {
2011 Feb 07
5
"Where" command in ctree (party)
Hello, I need to classify (i.e., export a vector with terminal node id's) new cases using a ctree (party package) model based on different cases (learning sample). I tried the where command with the following syntax: > where(tree, newdata=data2) expecting to get terminal nodes of data2 cases based on rules of tree model (data1 as learning sample). However it returned the following error
2009 Oct 05
1
btrfs-progs trivial: Double definition of BTRFS_CSUM_TYPE_CRC32 in ctree.h
Hello, I noticed a double definition of BTRFS_CSUM_TYPE_CRC32 in ctree.h and attach a patch that removes it. Best regards, Dirk
2011 Sep 08
1
Need formatting help - ctree - plot.party - node_hist
Hi, I am trying to get the terminal nodes of a plot of a ctree object to look nice. Using the iris data I have: library(party) mtree <- ctree(Species ~ ., data=iris) plot(mtree,terminal_panel=node_barplot(mtree)) The terminal nodes don't display the species names because the names are displayed horizontally. ?I would like to reduce the size of the labels and make the terminal nodes
2013 Apr 02
1
ctree (party) - select a specific variable in the first split
Hello, My question is related to ctree() function from the library 'party'. Is there a way to force ctree() to use a specific variable in the first split? I am asking because the first split contains two variables with very similar scores, and choosing the alternative variable would induce a tree somewhat easier to interpret. Thanks, Sal
2011 Mar 24
1
Ctree Model Variables
Hello! I am not familiar to deal with S4 objects in R, so this question can be stupid, but I hope I can get an answer. :P I'm trying to extract what are the response and explanatory variables from a Binary Tree and Random Forest. I could already extract the response variable from a Binary Tree using the response method specified on documentation. But Random Forest didn't had a similar