similar to: Rsolnp package: warning messages

Displaying 19 results from an estimated 19 matches similar to: "Rsolnp package: warning messages"

2009 Jan 27
1
Problem with RMA using limma, oligo and pdInfoBuilder packages
Hi, I am a Ph.D. student from Québec, Canada. I’m a beginner with R and Bioconductor. Until now the only experience I have is in analyzing microarray data using affy and limma packages. Now I am trying to analyze Rat Gene 10 st arrays and I would like to run RMA analysis and Smyth moderated t test on those arrays. Since no cdf official package is available for those arrays, after reading many
2012 Jul 18
4
The best solver for non-smooth functions?
# Hi all, # consider the following code (please, run it: # it's fully working and requires just few minutes # to finish): require(CreditMetrics) require(clusterGeneration) install.packages("Rdonlp2", repos= c("http://R-Forge.R-project.org", getOption("repos"))) install.packages("Rsolnp2", repos= c("http://R-Forge.R-project.org",
2008 Mar 10
0
build.mim() from the minet package
Hi, I am trying to contstruct a mutual informtation matrix using the function build.mim() from the minet package: > build.mim(myData, estimator="empirical") and I have two questions. 1.) The estimator "empirical" computes the entropy of the empirical probability distribution. This probably means it is using this definition of the entropy: H = sum_x sum_y p(x,y)* log(
2010 Oct 28
1
Rsolnp examples
I'm interested in the Rsolnp package. For their primary function "solnp", one example is given, and there is a reference to "unit tests". Anyone know where these can be found? Also, Rsolnp is used in a few other packages (e.g., depmixS4), but I cannot seem to find source illustrating its call sequence, and the precise definition of the functions passed. Can anyone help?
2010 May 06
2
Problem with nested functions - functions nested too deeply in source code
Hi all! I¹m just implementing the Ullmann¹s algorithm for searching subgraph isomorphisms in graphNEL objects. The algorithm is running with smaller graphs, but when I¹m calling it i get an R error message saying that functions are nested too deeply in source code. I found out that the problem is in the so called refinement procedure of the algorithm which consists of 10 different functions,
2023 Aug 31
2
[PATCH v2] vdpa/mlx5: Fix firmware error on creation of 1k VQs
A firmware error is triggered when configuring a 9k MTU on the PF after switching to switchdev mode and then using a vdpa device with larger (1k) rings: mlx5_cmd_out_err: CREATE_GENERAL_OBJECT(0xa00) op_mod(0xd) failed, status bad resource(0x5), syndrome (0xf6db90), err(-22) This is due to the fact that the hw VQ size parameters are computed based on the umem_1/2/3_buffer_param_a/b capabilities
2009 Feb 12
5
Extending each element in a list, or rbind()-ing arrays of different length without recycling
Hi, I'm trying to take a matrix such as [,1] [,2] [,3] [,4] [,5] [1,] 2 7 2 7 9 [2,] 10 10 6 8 6 [3,] 1 9 7 2 0 and generate a new matrix which contains only the unique values in each row: [,1] [,2] [,3] [,4] [,5] [1,] 2 7 9 NA NA [2,] 10 6 8 NA NA [3,] 1 9 7 2 0 My problem is that I can use
2005 Jul 21
0
[LLVMdev] Re: Dependence Analysis
On Thu, 21 Jul 2005, Naftali Schwartz wrote: >> If you're interested in dependence analysis, the next important step is > to >> start analyzing distance and direction vectors. > > Well, specifically, I was thinking of a mechanism to turn this: The indvars pass is *intentionally* restricted to only promoting affine expressions to array subscripts, not arbitrary
2005 Jul 21
5
[LLVMdev] Re: Dependence Analysis
> LLVM already includes this: the -indvars pass. It turns things like this: > > int *P = for (...; ... ; ++P) > *P > > to: > > int *P = ... > for (int i = 0; ... ; ++i) > P[i] > > If you're interested in dependence analysis, the next important step is to > start analyzing distance and direction vectors. Well, specifically, I was thinking of a
2005 Jul 26
1
[LLVMdev] llvm::ConvertibleToGEP
Well, I guess I was hoping soemthing like this would help in the pointer-to-array transformation for the following code: > > int A[100], B[100], C[100], X, Y, Z; > > > > int *p_a = &A[0]; > > int *p_b = &B[0]; > > int *p_c = &C[0]; > > > > int i, j, k, f; > > for ( k = 0; k < Z; k++ ) > >
2005 Apr 18
4
longer object length, is not a multiple of shorter object length in: kappa * gcounts
Hi, I was using a density estimation function as follows: > est <- KernSmooth::bkde(x3, bandwidth=10) When setting bandwidth less than 5, I got the error "longer object length, is not a multiple of shorter object length in: kappa * gcounts ". I wonder if there is anybody who can explain the error for me? Thanks! Hui
2017 Dec 04
0
YNT: ggtern and bquote...
reading ?plotmath you might notice that "_" isn't the propper syntax for subscripts. This will work: ggtern(data=x11,aes(A,B,C,xend = c(0.7,.00,0.7),yend = c(.30,.50,.0),zend =c(.0,.50,0.3)))+ geom_point()+ theme_showarrows()+geom_segment(size=.5)+ geom_text_viewport(x=c(.45,.27,.37),y=c(.32,.29,.22),label=c("P[a]","P[b]","P[c]"), parse=TRUE)
2010 Aug 10
1
[Fwd: Re: optimization subject to constraints]
-------------- next part -------------- An embedded message was scrubbed... From: Gildas Mazo <gildas.mazo at curie.fr> Subject: Re: [R] optimization subject to constraints Date: Tue, 10 Aug 2010 15:49:19 +0200 Size: 4924 URL: <https://stat.ethz.ch/pipermail/r-help/attachments/20100810/78862894/attachment.eml>
2017 Dec 04
1
ggtern and bquote...
D'oh! Thanks for pointing this out. I blame caffeine depletion at the time... -pd > On 4 Dec 2017, at 15:48 , Eik Vettorazzi <E.Vettorazzi at uke.de> wrote: > > reading ?plotmath you might notice that "_" isn't the propper syntax for > subscripts. This will work: > > ggtern(data=x11,aes(A,B,C,xend = c(0.7,.00,0.7),yend = > c(.30,.50,.0),zend
2015 Oct 27
2
How to create global symbol from record offset
I would like to create something like this (x86_64) .section __DATA,__data .align 4 _a: .long 18 .globl _b _b: .long 48 If you like to notice, there is no alignment between _a and _b. _b is basically offseting into a record structure. ---- When I use two discrete structs, I get .aligns and I also don't trust the tools to keep the two globals together. %struct.a = type { i32 }
2020 Jul 16
0
[PATCH vhost next 10/10] vdpa/mlx5: Add VDPA driver for supported mlx5 devices
On 2020/7/16 ??3:23, Eli Cohen wrote: > Add a front end VDPA driver that registers in the VDPA bus and provides > networking to a guest. The VDPA driver creates the necessary resources > on the VF it is driving such that data path will be offloaded. > > Notifications are being communicated through the driver. > > Currently, only VFs are supported. In subsequent patches we will
2017 Dec 04
1
YNT: ggtern and bquote...
Hi, My example code is this; x11<-data.frame(A=c(.6,.6,.6),B=c(.20,.20,.20),C=c(0.20,.20,.20)) ggtern(data=x11,aes(A,B,C,xend = c(0.7,.00,0.7),yend = c(.30,.50,.0),zend =c(.0,.50,0.3)))+ geom_point()+ theme_showarrows()+geom_segment(size=.5)+ geom_text_viewport(x=c(.45,.27,.37),y=c(.32,.29,.22),label=as.expression("P_a","P_b","P_c"))
2008 May 21
0
Errors in using gdb (PR#11496)
> This message is in MIME format. Since your mail reader does not understand this format, some or all of this message may not be legible. --B_3294209241_521622 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit I have been unable to find any discussion regarding this issue, but I have been able to reproduce it on two different machines. Both computer are Macs running
2008 Jun 30
4
Rebuild of kernel 2.6.9-67.0.20.EL failure
Hello list. I'm trying to rebuild the 2.6.9.67.0.20.EL kernel, but it fails even without modifications. How did I try it? Created a (non-root) build environment (not a mock ) Installed the kernel.scr.rpm and did a rpmbuild -ba --target=`uname -m` kernel-2.6.spec 2> prep-err.log | tee prep-out.log The build failed at the end: Processing files: kernel-xenU-devel-2.6.9-67.0.20.EL Checking