Displaying 19 results from an estimated 19 matches similar to: "Rsolnp package: warning messages"
2009 Jan 27
1
Problem with RMA using limma, oligo and pdInfoBuilder packages
Hi,
I am a Ph.D. student from Québec, Canada. I’m a beginner with R and
Bioconductor. Until now the only experience I have is in analyzing
microarray data using affy and limma packages. Now I am trying to analyze
Rat Gene 10 st arrays and I would like to run RMA analysis and Smyth
moderated t test on those arrays. Since no cdf official package is available
for those arrays, after reading many
2012 Jul 18
4
The best solver for non-smooth functions?
# Hi all,
# consider the following code (please, run it:
# it's fully working and requires just few minutes
# to finish):
require(CreditMetrics)
require(clusterGeneration)
install.packages("Rdonlp2", repos= c("http://R-Forge.R-project.org",
getOption("repos")))
install.packages("Rsolnp2", repos= c("http://R-Forge.R-project.org",
2008 Mar 10
0
build.mim() from the minet package
Hi,
I am trying to contstruct a mutual informtation matrix using the
function build.mim() from the minet package:
> build.mim(myData, estimator="empirical")
and I have two questions.
1.) The estimator "empirical" computes the entropy of the empirical
probability distribution. This probably means it is using this
definition of the entropy: H = sum_x sum_y p(x,y)* log(
2010 Oct 28
1
Rsolnp examples
I'm interested in the Rsolnp package. For their primary function
"solnp", one example is given, and there is a reference to "unit
tests". Anyone know where these can be found? Also, Rsolnp is
used in a few other packages (e.g., depmixS4), but I cannot seem
to find source illustrating its call sequence, and the precise
definition of the functions passed.
Can anyone help?
2010 May 06
2
Problem with nested functions - functions nested too deeply in source code
Hi all!
I¹m just implementing the Ullmann¹s algorithm for searching subgraph
isomorphisms in graphNEL objects. The algorithm is running with smaller
graphs, but when I¹m calling it i get an R error message saying that
functions are nested too deeply in source code. I found out that the problem
is in the so called refinement procedure of the algorithm which consists of
10 different functions,
2023 Aug 31
2
[PATCH v2] vdpa/mlx5: Fix firmware error on creation of 1k VQs
A firmware error is triggered when configuring a 9k MTU on the PF after
switching to switchdev mode and then using a vdpa device with larger
(1k) rings:
mlx5_cmd_out_err: CREATE_GENERAL_OBJECT(0xa00) op_mod(0xd) failed, status bad resource(0x5), syndrome (0xf6db90), err(-22)
This is due to the fact that the hw VQ size parameters are computed
based on the umem_1/2/3_buffer_param_a/b capabilities
2009 Feb 12
5
Extending each element in a list, or rbind()-ing arrays of different length without recycling
Hi,
I'm trying to take a matrix such as
[,1] [,2] [,3] [,4] [,5]
[1,] 2 7 2 7 9
[2,] 10 10 6 8 6
[3,] 1 9 7 2 0
and generate a new matrix which contains only the unique values in each row:
[,1] [,2] [,3] [,4] [,5]
[1,] 2 7 9 NA NA
[2,] 10 6 8 NA NA
[3,] 1 9 7 2 0
My problem is that I can use
2005 Jul 21
0
[LLVMdev] Re: Dependence Analysis
On Thu, 21 Jul 2005, Naftali Schwartz wrote:
>> If you're interested in dependence analysis, the next important step is
> to
>> start analyzing distance and direction vectors.
>
> Well, specifically, I was thinking of a mechanism to turn this:
The indvars pass is *intentionally* restricted to only promoting affine
expressions to array subscripts, not arbitrary
2005 Jul 21
5
[LLVMdev] Re: Dependence Analysis
> LLVM already includes this: the -indvars pass. It turns things like
this:
>
> int *P = for (...; ... ; ++P)
> *P
>
> to:
>
> int *P = ...
> for (int i = 0; ... ; ++i)
> P[i]
>
> If you're interested in dependence analysis, the next important step is
to
> start analyzing distance and direction vectors.
Well, specifically, I was thinking of a
2005 Jul 26
1
[LLVMdev] llvm::ConvertibleToGEP
Well, I guess I was hoping soemthing like this would help in the
pointer-to-array transformation for the following code:
> > int A[100], B[100], C[100], X, Y, Z;
> >
> > int *p_a = &A[0];
> > int *p_b = &B[0];
> > int *p_c = &C[0];
> >
> > int i, j, k, f;
> > for ( k = 0; k < Z; k++ )
> >
2005 Apr 18
4
longer object length, is not a multiple of shorter object length in: kappa * gcounts
Hi,
I was using a density estimation function as follows:
> est <- KernSmooth::bkde(x3, bandwidth=10)
When setting bandwidth less than 5, I got the error "longer object
length, is not a multiple of shorter object length in: kappa * gcounts ".
I wonder if there is anybody who can explain the error for me?
Thanks!
Hui
2017 Dec 04
0
YNT: ggtern and bquote...
reading ?plotmath you might notice that "_" isn't the propper syntax for
subscripts. This will work:
ggtern(data=x11,aes(A,B,C,xend = c(0.7,.00,0.7),yend =
c(.30,.50,.0),zend =c(.0,.50,0.3)))+
geom_point()+
theme_showarrows()+geom_segment(size=.5)+
geom_text_viewport(x=c(.45,.27,.37),y=c(.32,.29,.22),label=c("P[a]","P[b]","P[c]"),
parse=TRUE)
2010 Aug 10
1
[Fwd: Re: optimization subject to constraints]
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2017 Dec 04
1
ggtern and bquote...
D'oh! Thanks for pointing this out. I blame caffeine depletion at the time...
-pd
> On 4 Dec 2017, at 15:48 , Eik Vettorazzi <E.Vettorazzi at uke.de> wrote:
>
> reading ?plotmath you might notice that "_" isn't the propper syntax for
> subscripts. This will work:
>
> ggtern(data=x11,aes(A,B,C,xend = c(0.7,.00,0.7),yend =
> c(.30,.50,.0),zend
2015 Oct 27
2
How to create global symbol from record offset
I would like to create something like this (x86_64)
.section __DATA,__data
.align 4
_a:
.long 18
.globl _b
_b:
.long 48
If you like to notice, there is no alignment between _a and _b.
_b is basically offseting into a record structure.
----
When I use two discrete structs, I get .aligns and I also don't trust
the tools to keep the two globals together.
%struct.a = type { i32 }
2020 Jul 16
0
[PATCH vhost next 10/10] vdpa/mlx5: Add VDPA driver for supported mlx5 devices
On 2020/7/16 ??3:23, Eli Cohen wrote:
> Add a front end VDPA driver that registers in the VDPA bus and provides
> networking to a guest. The VDPA driver creates the necessary resources
> on the VF it is driving such that data path will be offloaded.
>
> Notifications are being communicated through the driver.
>
> Currently, only VFs are supported. In subsequent patches we will
2017 Dec 04
1
YNT: ggtern and bquote...
Hi,
My example code is this;
x11<-data.frame(A=c(.6,.6,.6),B=c(.20,.20,.20),C=c(0.20,.20,.20))
ggtern(data=x11,aes(A,B,C,xend = c(0.7,.00,0.7),yend = c(.30,.50,.0),zend =c(.0,.50,0.3)))+
geom_point()+
theme_showarrows()+geom_segment(size=.5)+
geom_text_viewport(x=c(.45,.27,.37),y=c(.32,.29,.22),label=as.expression("P_a","P_b","P_c"))
2008 May 21
0
Errors in using gdb (PR#11496)
> This message is in MIME format. Since your mail reader does not understand
this format, some or all of this message may not be legible.
--B_3294209241_521622
Content-Type: text/plain;
charset=us-ascii
Content-Transfer-Encoding: 7bit
I have been unable to find any discussion regarding this issue, but I have
been able to reproduce it on two different machines. Both computer are Macs
running
2008 Jun 30
4
Rebuild of kernel 2.6.9-67.0.20.EL failure
Hello list.
I'm trying to rebuild the 2.6.9.67.0.20.EL kernel, but it fails even without
modifications.
How did I try it?
Created a (non-root) build environment (not a mock )
Installed the kernel.scr.rpm and did a
rpmbuild -ba --target=`uname -m` kernel-2.6.spec 2> prep-err.log | tee
prep-out.log
The build failed at the end:
Processing files: kernel-xenU-devel-2.6.9-67.0.20.EL
Checking