Displaying 20 results from an estimated 100 matches similar to: "Save Venn-diagram (Vennerable) together with table and plot in single pdf page"
2012 Dec 03
0
Creating Venn-like intersections for multiple data sets: Vennerable Package help
I was wondering if you could lend me some advice in using the Vennerable
package. I am having trouble creating the right sort of Venn function
output. I have "TRUE" and "FALSE"/NA
str(mutset)
'data.frame': 2310 obs. of 3 variables:
$ TestResult.1 : chr NA NA NA NA ...
$ TestResult.2 :chr NA NA NA NA...
$ TestResult.3
2014 Jul 03
2
How to install Vennerable
Hi,
I'm new to using R and would like to use Vennerable to process my data and
make Venn diagrams. However I cannot seem to install the package. If I enter
the command
install.packages("Vennerable", repos="http://R-Forge.R-project.org")
I get the following message:
package ?Vennerable? is available as a source package but not as a binary
Warning Message:
package
2010 Jul 13
0
Modify the plotting parameters for Vennerable obj.
Dear List,
I would like to modify the settings for plotting a Vennerable object,
but I don't know how...so if anyone has an idea I would be really
graetfull.
best, Fabian
some R code to illustrate my problem:
####
library(Vennerable)
ven <- compute.Venn(Venn(SetNames=c("A", "B"), Weight=c(0,111,106, 26)))
# now my problem is that whenever I plot the object, the
2010 Apr 14
1
Problem trying to plot Vennerable object
Hi,
I'm new to the list so apologies if this has been asked before. I
couldn't find any refs in google.
I recently installed the Vennerable library from Rforge, this required
an upgrade of R to 2.10.0 by the 'pylr' dependency.
However, a very simple command fails:
Vcomb <- Venn(SetNames= c("EOCT", "EOCM"), Weight=c(0, 11841, 24084, 24660))
plot(Vcomb)
2011 Oct 02
1
generating Venn diagram with 6 sets
Dear r-helpers,
Here I would like to have your kind helps on generating Venn diagram.
There are some packages within R on this task, like venneuler, VennDiagram,
vennerable. But, vennerable can not be installed on my Mac book. It seems
VennDiagram can not work on my data. And, venneuler may have generated a
wrong Venn diagram to me.
Do you have any experience/expertise on those Venn diagram?
2010 Oct 31
0
Fwd: ForestPlot or similar
> From: Abhijit Dasgupta <adasgupta@araastat.com>
> Date: October 31, 2010 1:30:02 AM EDT
> To: Matt Shotwell <shotwelm@musc.edu>
> Subject: Re: [R] ForestPlot or similar
>
> I just did something very similar using ggplot's pointrange geom. In the following, I'm plotting hazard ratios, for which the nominal value is 1 and not 0. x has 5 columns: drug, hr,
2012 Apr 21
0
help with rmeta package
Dear R users,
I'm trying figuring out with forest plot and rmeta. Here's my code...
library(rmeta)
tabletext <- structure(c("", NA, "Sex", "[F]", "[M]", NA,
"Age class", "(0,60]", "(60,80]", NA,
"Karnofsky class", "[70;90]",
2011 Mar 09
3
Venn Diagram corresponding to size in R
I was wondering if anyone could help me figure out how to make a Venn
diagram in R where the circles are scaled to the size of each dataset. I
have looked at the information for venn (in gplots) and vennDiagram (in
limma) and I cannot seem to figure out what parameter to change. I have
looked this up online and do not seem to be seeing anyone else who has
posted this question or the answer to it
2007 Apr 13
0
[952] branches/wxruby2/wxwidgets_282/doc/textile/gridcellattr.txtl: Doc fix from Wx 2.8
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1//EN"
"http://www.w3.org/TR/xhtml11/DTD/xhtml11.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head><meta http-equiv="content-type" content="text/html; charset=utf-8" /><style type="text/css"><!--
#msg dl { border: 1px #006 solid; background: #369; padding:
2010 Dec 07
1
colorful venn diagram
Hi all,
I am trying to plot a venn diagram using vennDiagram in limma package,
but I have no idea how to have it colorful such as the color one created
by the following website: http://www.pangloss.com/seidel/Protocols/venn.cgi.
Any one has any advice?
Thanks,
D.
2009 Mar 21
1
Forestplot () box size question
Hi All,
I have been able to modify the x-axis to start at zero by adding xlow
and xhigh parameters; that was pretty simple. I have been unable to
find the location of the code that would turn off the information
weighting of the box size (I have smaller randomized trials getting
less weight than a much larger non-randomized trial). The function
is forestplot() from rmeta.
Thanks for any
2010 Sep 13
2
proportion
Hi ,
SO i have been on a role of asking simple questions lately. So much for
feeling like im getting this R business.
I wrote a script 2 weeks ago that utilized "proportion" to turn values in a
table (from "table") into proportions to then graph. I now get an error
that proportion is not a function so im confused. I ran the script a few
times and im thinking maybe i had
2007 Oct 31
1
textplot() in gplots causes problems (0x9)
Hello,
I am using textplot function in gplots package to put some model
output inside a PDF file, but it does not seem to work properly with
PDF.
I am doing follwing:
pdf(file="C:/...", paper="a4", width=8, height=12)
.model <- lm(.model.formula, data=database)
textplot(capture.output(summary(.model)), valign="top", halign="left")
I am getting these
2007 Aug 18
0
rmeta package forestplot() function
Dear R users,
I am trying to create a forest plot with a table of text using the
forestplot() function in the rmeta package.
I have been trying to reduce the font size of the resulting table of text,
but have not been successful. I have tried adding options like 'cex' or
'font' but none of them seem to work. Is there anything I could do?
This is what I have so far:
2011 Jul 13
0
venn diagram color using "venn"
Hi, I found a package "venn" to create a venn diagram. I need to color the
circles. Can any one suggest me how to do using "Venn".
--
View this message in context: http://r.789695.n4.nabble.com/venn-diagram-color-using-venn-tp3664528p3664528.html
Sent from the R help mailing list archive at Nabble.com.
2012 Jan 19
1
venn.diagram how to control circle diameter
Hi there,
Is there a way to control the circle diameter in venn.diagram function of
VennDiagram package?
Thanks
Mike
[[alternative HTML version deleted]]
2004 May 26
1
Venn diagrams
Hello there,
Does anyone know how to plot venn diagrams in R?
Ive searched the mail archive lists but to no avail.
Regards,
Wayne Jones
KSS Ltd
Seventh Floor St James's Buildings 79 Oxford Street Manchester M1 6SS England
Company Registration Number 2800886
Tel: +44 (0) 161 228 0040 Fax: +44 (0) 161 236 6305
mailto:kssg@kssg.com http://www.kssg.com
The information in this
2006 Sep 02
0
venn diagrams
I need to generate venn diagrams for some of my data. I am using the
venn library. Is there a function that generates the ids and attributes
that I can pass on to venn
Library(venn)
ids <- c(1,1,1,2,2,2,3,3,3,4,4,5,5,5,6,6,7,8,9,10)
attributes <-
2009 Sep 04
1
limmaGUI anomaly: top-table & venn-diagram for linear model
Hello,
In limmaGUI, after running a linear model for a single gene & time point
(mutant vs control), the venn-diagram for differentially expressed genes
with a p-value cut-off gives a different number than the top-table with
the same cut-off (2600 vs. 791).
I have seen the same thing happen before for multiple time points (when
the venn-diagram is more relevant)
Any ideas what is going on?
2009 Oct 29
0
a minor bug in "venn" from gplots?
Hi list,
I found this one when I was trying to output the Venn diagram to a .pdf file.? When there are 4 sets of groups to draw, the .pdf file automatically has 3 pages and the figure only appears on the 3rd page in the .pdf file with the first 2 pages being blank.? Try the following: (I'm using R-2.9.0 on WinXP, gplots 2.7.1).? gplots 2.7.3 has the same problem.