similar to: how to normalize a subset of affy data using MAS5 method

Hello everybody, I am trying to use mas5 to normalize some array data and using mas5 and mas5calls. But I received these warning message. If anybody can explain the problem I would really appreciate that. Thanks in advance. background correction: mas PM/MM correction : mas expression values: mas background correcting...Warning message: 'loadURL' is deprecated. Use 'load(url())'

Hi.... I have a question about how to increase my memory size, could someone answer it for me?? I am using Bioconductor in R to calculate gene expression values with mas5, dchip, and mas4. I have only 18 samples, all from Affymetrix U133A Plus 2 arrays, which has ~54,000 genes. My machine equipments are: CPU P4 3.0GHz, and 1GM RAM. Somehow when I was running mas5 in R, it always showed the error

Hi all.. I'm very new R, and i'm analyzing microarray data using Bioconductor.. Recently i was given microarray data to analyze. The problem is whenever i run MAS5 presence calls algorithm, it throws an error saying NA/NaN/Inf in foreign function. How do i remove such NA/NaN/Inf's ?? I tried na.omit(dataframe) but stil problem exists. dimension of matrix (data) is 35556 7. >

Hi, I have built R (current development version) and BioConductor 1.7 with portland group compiler on a AMD Opteron. When I ran qc assessment on Affymetrix latin square data set, I got the following output, Loading required package: affy Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view,

Neither biocLite nor the GUI menus can install packages on my system. Here is relevant output: > version _ platform i386-pc-mingw32 arch i386 os mingw32 system i386, mingw32 status major 2 minor 11.1 year 2010 month 05 day 31 svn rev 52157 language R version.string R version 2.11.1 (2010-05-31) > source("http://bioconductor.org/biocLite.R") BioC_mirror =

Hi, I am trying to install Bioconductor onto R version 2.7.0 for Windows. I installed R, then followed the instructions on http://www.bioconductor.org/download, which state that you should type the following: source("http://bioconductor.org/biocLite.R") biocLite() When I do that, I get the following error: Running biocinstall version 2.2.9 with R version 2.7.0 Your version of R

Hi again, I have been playing around with the order of loading packages, and as far as I can tell, there's nothing specific with affycoretools that's causing my Rgui to crash (i.e., shuts down and the Microsoft 'please send error report' box pops up). Instead, it has something to do with the order & type of packages that are loaded that add items to the menu bar by

hi all, Am new to R. I am having problems installing Bioconductor package in R on fedora core 4 running on AMD64 bit machine. this is the error message I get : gcc -shared -L/usr/local/lib -o affyPLM.so avg_log.o biweight.o chipbackground.o common_types.o do_PLMrlm.o do_PLMrma.o do_PLMthreestep.o idealmismatch.o LESN.o lm.o lm_threestep.o log_avg.o matrix_functions.o

Hello! I activated quota plugin { quota = maildir:User quota quota_rule = *:storage=1GB # 10% of 1GB = 100MB quota_rule2 = Trash:storage=+10%% } But when I want to do per user quota in the passwd-file ...vhosts/anup.de/anmeyer::userdb_mail=maildir:~/userdb_quota_rule=*:bytes=10G I get this in the logfile and can't login: Jun 08 22:25:52 imap(anmeyer at anup.de): Error:

Hello! I tried to setup dovecot to work with IMAP and POP3 but when I connect with Squirrelmail, I get an error saying CREATE "INBOX.Sent" reason: Mailbox doesn't allow inferior mailboxes # dovecot --version 1.0.5 # dovecot -n # 1.0.5: /etc/dovecot/dovecot.conf log_path: /var/log/dovecot protocols: imap imaps pop3 ssl_disable: yes login_dir: /var/run/dovecot/login

Hello! A Server running openSUSE 12.3 and dovecot version 2.1.13. In the log I find Oct 19 00:23:23 managesieve(anmeyer at anup.de): Warning: sieve-storage: Active sieve script symlink /var/spool/vhosts/anup.de/anmeyer/.dovecot.sieve is broken: invalid/unknown path to storage (points to /var/spool/vhosts/anup.de/anmeyer/.sieve/managesieve.sieve). But the link is ok and when I login to roundcube

Hallo Waffenmeister! Ralf Hildebrandt <Ralf.Hildebrandt at charite.de> wrote: > > Apr 7 14:07:52 delta postfix/qmgr[19078]: 1D8921B31260: from=<anmeyer at anup.de>, size=1492149, nrcpt=1 (queue active) > > Apr 7 14:07:53 delta postfix/pipe[19091]: 1D8921B31260: to=<miles at anup.de>, relay=dovecot, delay=2542, delays=2542/0.01/0/0.29, dsn=4.3.0, status=deferred

Hello all! Some month ago I upgraded our dovecot installation from version 1.0.5 to version 2.1.7 without having any trouble. Postfix is delivering email directly per virtual transport to the maildirs and mailboxes of the users in /var/spool/vhosts/domains/.... Now I want to use dovecot-lda and created a new entry in the master.cf of postfix. dovecot unix - n n - -

> -----Original Message----- > From: Michael S. Tsirkin [mailto:mst at redhat.com] > Sent: Monday, April 23, 2018 9:41 PM > To: Loic PALLARDY <loic.pallardy at st.com> > Cc: Anup Patel <anup at brainfault.org>; linux-remoteproc at vger.kernel.org; > Ohad Ben-Cohen <ohad at wizery.com>; Bjorn Andersson > <bjorn.andersson at linaro.org>; virtualization at

From: Pranavkumar Sawargaonkar <pranavkumar@linaro.org> This patch adds initial platform stubs for APM X-Gene. Signed-off-by: Anup Patel <anup.patel@linaro.org> Signed-off-by: Pranavkumar Sawargaonkar <pranavkumar@linaro.org> Drop earlyprintk (split into earlier patch). Only build on ARM64. Drop empty init and reset hooks and enable 1:1 workaround. Signed-off-by: Ian

Good day! Apr 07 10:59:40 imap(anmeyer at anup.de): Info: Disconnected: Disconnected in IDLE in=725 out=2546 Apr 07 10:59:59 imap(anmeyer at anup.de): Info: Disconnected for inactivity in=952 out=25789 Please someone explain to me the IDLE state and the inactivity state an what the numbers at in= and out= means! Andreas

We still have some tickets available for the Women in Compilers and Tools reception that is held the night before the 2018 Euro LLVM Developers’ Meeting in Bristol, UK. Tickets are available here. https://www.eventbrite.com/e/2018-european-llvm-developers-meeting-women-in-compilers-and-tools-reception-tickets-42287427835 This is an evening reception on April 15th that includes dinner, drinks,

Is your passion for Open Source software stronger than the evil organizational forces (aka workplace idiosyncrasies) which try to blunt your effectiveness? Do you yearn for the freedom to truly contribute as per your own terms? Are you forced to clothe your Open Source mind & body with "proprietary clothes"? If you replied positively to any of the above, it''s time to

Hi How do I install "gregmisc" packages? I did- % sudo R > install.packages("gregmisc") . . > barplot2() but, Error: couldn't find function "barplot2" -- atuya Mac OSX 10.2.6 R 1.7.1

Hi! Who can tell me why I have double login lines for some accounts? Oct 31 12:35:36 imap-login: Info: Login: user=<anmeyer at anup.de>, method=CRAM-MD5, rip=84.179.59.177, lip=78.47.3.18, mpid=29905, TLS, TLSv1 with cipher RC4-MD5 (128/128 bits) Oct 31 12:35:36 imap-login: Info: Login: user=<anmeyer at anup.de>, method=CRAM-MD5, rip=84.179.59.177, lip=78.47.3.18, mpid=29906, TLS,