similar to: Sweave

----- Original Message ----- > From: "Simon Urbanek" <simon.urbanek at r-project.org> > To: "Dan Tenenbaum" <dtenenba at fredhutch.org> > Cc: "R-devel" <r-devel at r-project.org> > Sent: Monday, January 12, 2015 5:50:35 PM > Subject: Re: [Rd] R CMD build looking for texi2dvi in the wrong place (R-devel) > > Dan, > > On

R CMD build fails with recent R-devel because it is looking for texi2dvi in /usr/local/bin, but on this system, MacTex has installed it in /usr/bin. $ R CMD build IRanges * checking for file 'IRanges/DESCRIPTION' ... OK * preparing 'IRanges': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR

Dan, On Jan 12, 2015, at 7:50 PM, Dan Tenenbaum <dtenenba at fredhutch.org> wrote: > R CMD build fails with recent R-devel because it is looking for texi2dvi in /usr/local/bin, but on this system, MacTex has installed it in /usr/bin. > No, you're looking at the wrong package - texi2dvi comes from texinfo which is now mandatory in version 5.2+ located in /usr/local since OS X

On 12/01/2015 6:26 PM, Dan Tenenbaum wrote: > > > ----- Original Message ----- >> From: "Simon Urbanek" <simon.urbanek at r-project.org> >> To: "Dan Tenenbaum" <dtenenba at fredhutch.org> >> Cc: "R-devel" <r-devel at r-project.org> >> Sent: Monday, January 12, 2015 5:50:35 PM >> Subject: Re: [Rd] R CMD build

I'm trying to get pgfSweave up and running. Hopefully I can get it working from within LyX, but first I'm just trying to get the simplest possible thing (compiling one of the example files in the pgfSweave package) to work. I'm using the example that comes in the pgfSweave package unmodified, but for reference I copied it to: http://pastebin.com/tW4RL6fs Configuration: R version

Hello everybody I'm am trying to build a pdf out of the Rd files that i wrote for a package, so that I can attach it to my thesis. if i Run Rd2pdf (or Rd2dvi) I get this error massage: Hmm ... looks like a package Converting Rd files to LaTeX . Creating pdf output from LaTeX ... Error in texi2dvi("Rd2.tex", pdf = (out_ext == "pdf"), quiet = FALSE, : Running

Dear all, I have some encoding problem which I'm not familiar with. Here is the case : I'm read data files which can have been generated from a computer either with global settings in french or in english. Here is an exemple ouf data file : * English output Time,Value 17,-0.0753953 17.05,-6.352454E-02 * French output. Time,Value 32,-7,183246E-02 32,05,3,469364E-02 In the first

Hello. I'm writing some simple text using sweave, and faced a strange problem with eps files produced for my plots (one example attached). Individual eps files are interpreted by ghostscript just fine, and show up without errors. But once I try to include them into main LaTeX/Sweave document (using regular \includegraphics, produced by Sweave), ghostscript gives me this error on those files:

Hi, I have trouble with Sweave (I think) cutting of my newlines. As stated in the help of Sweave, I generate tex code straight from R for dynamically computed reports. If I do this in R: for (i in 0:4) {cat("\n",i,"\n")};cat("\n 3") 0 1 2 3 4 3 The output looks correct. However, Sweave for some reason seems to trim everything outside

This may be asking too much, but I'm wondering if anyone has a solution (even a hack) for creating multiple (overlay) plots in an Sweave file and post-processing the overlays in beamer appropriately. For example, suppose I have a series of figure blocks in my .Rnw file: <<plot1,fig=TRUE>>= [stuff] @ <<plot2,fig=TRUE>>= [stuff] @ <<plot3,fig=TRUE>>=

MiKTeX has abruptly removed texi2dvi.exe from its distribution. (MiKTeX broke its updating process earlier and an attempted update trashed the updater on my installation so I was forced to make a fresh install of the current distribution. I do not know if updates remove a currently installed texi2dvi.exe.) This has two consequences: 1) It is used by tools::texi2dvi() if found. As far as I

I am trying to pass a additional argument to texi2dvi, for example to use the aux-directory. Looks like this is not possible via options: options(texi2dvi='texi2dvi --tex-option="-aux-directory=auxdir"') texi2dvi(file = "GBPL3.tex", pdf = TRUE) #Error in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) : # '"texi2dvi

L.S. I noticed weird tools::texi2dvi behaviour on R-alpha when specifying an absolute path to the .tex file. The same phenomenon also appears to occur on R-2.12.2, so maybe the issue is independent of R. I hope I did not overlook any important information. Best, Tobias > require(tools) Loading required package: tools > getwd() [1] "/home/tobias" >

Hello: I could use help understanding an error reported by "R CMD build sos" that's new with R 3.3.0: Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : Running 'texi2dvi' on 'sos.tex' failed. LaTeX errors: ! Undefined control sequence. l.1 \Sconcordance {concordance:sos.tex:sos.Rnw:% The control sequence at

Dear expeRts, below are two examples of using texi2dvi. The problem becomes clear from the second example: on cleaning, texi2dvi also deletes the generated .pdf file. Is there a solution? Cheers, Marius ## Example 1: texi2dvi cleans fine, without deleting the generated .pdf require(tools) sink(file="myLaTeXFile1.tex") cat("\\documentclass{article}\n")

I noticed a shQuote fix for Windows in the svn logs. Just wanted to point out that this will favorably affect texi2dvi on Windows which previously used UNIX quoting and so generated an incorrect Windows command. (Note that texi2dvi is used when creating vignettes.) Another problem is that the recommended tex distribution for Windows, fptex, does not have texi2dvi in the first place. The

Hi all I'm using Sweave and find it a treat. But one question: I use Sweave to create my pictures which are automatically included into LaTeX. For example, in the file test.Snw, I may have: % LaTeX stuff \begin{figure} <<fig=true,width=5,height=5>>= x1 <- seq(1,5, length=10) x2 <- sin(x1) plot(x1,x2) @ \caption{Plot} \end{figure} % More LaTeX This produces the LaTeX

Dear list, On Fedora 8 I downloaded the beta version of R via svn. make and make check-all worked fine, but make vignettes is failing with: make[1]: Entering directory `/home/gavin/R/2-7-patched/build/src/library' building/updating vignettes for package 'grid' ... processing 'displaylist.Snw' /usr/bin/texi2dvi: pdflatex exited with bad status, quitting. Error in

Hi, I am trying to create a Bioconductor package. Everything installs and checks fine. Now I'm on my last step, which is to create a vignette. I'm trying to test the Sweave process, to make sure I can build a vignette. I am stuck at the texi2dvi stage, which fails when I try to process the example Sweave-test-1.tex file. I am using Windows binary R distributions, and have the same

On 17/06/2016 10:21 PM, Spencer Graves wrote: > Hello: > > > Changes in R seem to have broken the sos vignette, and I don't > know how to fix it. The build on R-forge, > "https://r-forge.r-project.org/R/?group_id=235&log=build_src&pkg=sos&flavor=patched", > ends as follows: > > > Error in texi2dvi(file = file, pdf = TRUE, clean =