Displaying 8 results from an estimated 8 matches similar to: "HWEBayes, swapping the homozygotes genotype frequencies"
2008 Mar 26
0
genotype analysis
Dear mailing list,
I'm still quite a newbie in the statistical analysis of
genotype/allele data, resp. more generally in the analysis of
categorical variables. Moreover, I'm currently totally confused by the
many R packages available to do such analysis.
Here is my case: I've got a list of genes, and a number of
case-control population pairs, and for each population and gene, the
2002 Nov 27
0
R genetics package now available
The "genetics" package for handling single-locus genetic data is now
available on CRAN in both source and Windows binary formats. The purpose of
this package is to make it easy to create and manipulate genetic
information, and to facility use of this information in statistical models.
The library includes classes and methods for creating, representing, and
manipulating genotypes
2002 Nov 27
0
R genetics package now available
The "genetics" package for handling single-locus genetic data is now
available on CRAN in both source and Windows binary formats. The purpose of
this package is to make it easy to create and manipulate genetic
information, and to facility use of this information in statistical models.
The library includes classes and methods for creating, representing, and
manipulating genotypes
2007 Oct 19
1
(no subject)
# Hello
# I have a question regarding pairwise calculations of a matrix using a
"for-loop."
# Below I have a matrix "X" with 8 columns. These are Genotypic data so
Column1 & Column2 is
# a unit, Column3 & Column4 is a unit, Column5 & Column6 is a unit, and
Coulmn7 & 8 is a unit.
# I have a loop designed to calculate the number of times an individual in
2007 Oct 19
1
conduct pairwise column comparisons without comparing a column to itself
# Hello
# I have a question regarding pairwise calculations of a matrix using a
"for-loop."
# Below I have a matrix "X" with 8 columns. These are genotypic data so
Column1 & Column2 is
# a unit, Column3 & Column4 is a unit, Column5 & Column6 is a unit, and
Coulmn7 & 8 is a unit.
# I have a loop designed to calculate the number of times an individual in
2009 Apr 20
1
generic genotype calling algorithm?
Hi,
I have Agilent and Illumina SNP data. That's the only thing I know about the
files - there seem to be no version specification in any of them.
Is there a generic genotype calling algorithm that I could try to use on
these datasets?
thanks,
N.
--
View this message in context: http://www.nabble.com/generic-genotype-calling-algorithm--tp23141124p23141124.html
Sent from the R help
2006 Dec 31
1
Genotype importing from Sequenom
Sequenom has an odd format of calling a SNP genotype
gg
[1] "C" "GA" "A" "C" "C" "AG" "C" "C" "T" "G"
homozygous A is called A and heterozygous is called AT
The genetics package cannot handle the fact that some genotypes are declared
with 2 letter while other are declared with only 1.
2008 Aug 22
2
help needed for HWE.exact in library "genetics"
Hi,
I have a genotype data for both case and controls and would like to calculate the HW p-value. However, since the number of one genotype is 0, I got wired result. Would someone help me to figure it out? Or confirm it's right? Thanks a lot.
============
> library( "genetics" )
NOTE: THIS PACKAGE IS NOW OBSOLETE.
The R-Genetics project has developed an set of enhanced