Displaying 20 results from an estimated 200 matches similar to: "return code 10 in the R documentation"
2009 Aug 30
1
Combining: R + Condor in 2009 ? (+foreach maybe?)
Hello dear R-help group (and David Smith from REvolution),
I would like to perform parallel computing using R with Condor (hopefully
using foreach or other recommended solutions, if available) for some
"Embarrassingly parallel" problem.
I will start by listing what I found so far, and then go on asking for help.
So far I found the a manual by Xianhong Xie from Rnews_2005-2 (see page
2008 Apr 24
1
R and condor
Hello,
I would be extremely grateful if anyone is able to provide any (rather obscure) advice on using R with Condor. I think I'm following Xianhong Xie's instructions (R News 5(2) 13-15) correctly, but my job just stays held in the queue (for days / months). I've checked condor_status to make sure there are plenty of machines available, but can't see any way to attack the
2006 Jan 24
1
Condor and R
Hi,
I was wondering if anyone has successfully linked R against the
Condor libraries so that R can be run as a Condor job in the
"standard" (not "vanilla") universe. The advantage of this would be
that due to checkpointing, jobs can be suspended and transferred to
another node. There is a good overview by Xianhong Xie here:
2015 May 14
1
Condor cluster setup advice (pointers) needed
Dear Experts,
Could someone recommend some "quick and dirty" HOWTO on condor based cluster?
A did a bunch of cluster setups, I always used PBS (or torque lately). But
my professor wants his to be Condor. I started reading Condor
documentation, and it is vast. And quick route, like: architecture chart,
and parameters I need to configure on master/submit, and compute nodes -
somehow
2008 Nov 16
1
help.start() displays index.html in emacs (PR#13293)
Full_Name: Juergen Rose
Version: 2.8.0 (2008-10-20)
OS: Linux 2.6.27.4 x86_64 Intel
Submission from: (NULL) (87.185.220.122)
If I start as ordinary user rose R and help.start(), the help is displayed in
emacs. If I do as the user root, file:///tmp/Rtmpyzlc7Y/.R/doc/html/index.html
is shown as expected in a firefox windows. So it seems to be connected with my
private configuration. But I can not
2012 Jun 30
1
SSL_connect?? Because of master is not running?
My master is running 12.04
Version: 2.7.11-1ubuntu2
Depends: ruby1.8, puppetmaster-common (= 2.7.11-1ubuntu2)
My client is 10.04
Version: 2.6.3-0ubuntu1~lucid1
Depends: puppet-common (= 2.6.3-0ubuntu1~lucid1), ruby1.8
I followed this tutorial to install Puppet on the client: http://shapeshed.com/setting-up-puppet-on-ubuntu-10-04/
(I didn''t need that tar ball because the "best
2004 Feb 04
2
SAMBA and LDAP
Hello..
When i use the command
Smbpasswd ?a carguillo.
It adds this entry in LDAP.
# carguello,Personas,NOVA
dn: uid=carguello,ou=Personas,o=NOVA
uid: carguello
sambaSID: S-1-5-21-2532083711-3846753250-2864659012-2328
sambaPrimaryGroupSID: S-1-5-21-2532083711-3846753250-2864659012-513
sambaPwdCanChange: 1075936258
sambaPwdMustChange: 2147483647
sambaLMPassword:
2011 Jun 16
3
[LLVMdev] ARM support status (GHC/ARM new calling convention)
Hello,
I'm working on implementing GHC specific call convention into LLVM 2.9.
I've chosen LLVM 2.9 as a kind of stable reference point and I would
like to know how mature is ARM code generation chain inside this
release. I've had a hope that perhaps Apple as a main sponsor of LLVM is
using LLVM for their ARM based iOS software development, but I'm not
sure if I'm right
2020 Apr 17
4
HPC question: torques replacement
Dear Experts,
I know there are many HPC (high performance computing) experts on this
list. I'd like to ask your advise.
Almost two decades ago I chose to go with OpenPBS (turned down condor
and other alternatives for whatever reason) for clusters and number
crunchers I support for the Department at the university. It turned out
to be not bad, long lived choice. At some point I smoothly
2011 Aug 01
0
Condor Cloud + oVirt Node
I've discussed this a little with Ian off list, but relating to:
https://fedoraproject.org/wiki/Features/Condor_Cloud
Condor Cloud aims at setting up a bunch of Fedora nodes to act as a
mini-cloud managed via the Condor grid infrastructure. So the natural
question was... Why not use oVirt Node for this rather than a full
Fedora OS install?
Pulling condor-cloud and condor RPMs into the core
2009 Sep 30
1
Managing random number generating, while using Condor parallel computing
Hello all,
Recently I started playing with running R scripts on the Condor system in my
institute.
(For more on this, have a look at:
Running Long R Jobs with Condor DAG
by Xianhong Xie
link: http://cran.r-project.org/doc/Rnews/Rnews_2005-2.pdf
)
Might someone advice me about the following question:
How should I handle the RNG (random number generation) in the running of
parallel instances of R
2014 May 20
1
abrt dump qt selinux
Hi all,
Note: selinux was in permissive prior to error
Got this with a yum update:
abrt_version: 2.0.8
cgroup:
cmdline: semodule -n -r oracle-port -b base.pp.bz2 -i
accountsd.pp.bz2 ada.pp.bz2 cachefilesd.pp.bz2 cpufreqselector.pp.bz2
chrome.pp.bz2 awstats.pp.bz2 abrt.pp.bz2 aiccu.pp.bz2 amanda.pp.bz2
afs.pp.bz2 apache.pp.bz2 arpwatch.pp.bz2 audioentropy.pp.bz2
asterisk.pp.bz2
2009 Jul 27
2
Simple resource manager?
I need to serialize computing job requests for two different multicore
machines, and in some near future, for a cluster. I have worked with
SGE but it requires NFS and other administrative steps, plus it seems
a bit overkill for my needs. I guess some simpler queue managing
engine may have been developed, possibly over SSH. Any pointers? TIA.
--
Eduardo Grosclaude
Universidad Nacional del
1998 May 26
0
BUG: File locking and SMBmv
I suspect I've found a bug buried somewhere deep inside the
SMBmv code; I have an application, Archicad, which will not
allow you to file->save over the top of an existing file,
unless you happen to be the (unix) owner of that file.
Unix permissions are mode 664, users can otherwise manipulate
the files as expected.
I've attempted various combinations/ permutations of
2004 Jun 02
2
Distributed computing with R
Dear all,
We have started using R for data analysis since a few months and find it
useful. We are planning to acquire a high-end dedicated system for
microarray data analysis and thinking of a distributed environment. I
would appreciate if some one could send some pointers regarding how to
choose a proper hardware configuration, software (R or other software,
esp. MATLAB), issues on setting up
2010 Apr 07
6
Consecutive Jobs
Anyone know how to submit jobs to at or anything else that allows jobs
submitted to a queue to be executed consecutively?
I have a series of servers that submits a job via an ssh background
job but I can only have one execute at any given time.
Possibly some clever bash work?
Thanks!
jlc
2012 Jun 25
1
using multiple cpu's - scaling in processing power
Hi All
In the past I have worked with parallel processing in R where a function F
is applied to the elements of a list L. The more cpu cores one has, the
faster the process will run. At the time of launching the process for (F,L)
I will have a certain fixed number of cpu's that I can use. I have tested
this approach and it works fine (i.e. package 'multicore' , using 'mapply'
2008 Feb 11
2
Viable Approach to Parallel R?
All,
We are researching approaches to parallel R with the end goal of running
R in a distributed manner on a Linux cluster. We expect of course to do
some work decomposing our problems to be task-parallel or data-parallel,
but wouldn't mind getting an initial boost working with "embarrassingly
parallel" code sections and one of the approaches below.
Incidentally our environment
2011 Nov 16
3
clustering
Hey folks,
I just went through the archives trying to find some info on this but
did not come up with much other than it seems there are a few experts
here on the list.
I have no experience with clustering and have just taken over a Stem
Cell Research Lab that has a Grid Engine cluster. I have not yet dug
into the details of Grid Engine (only been here a week now) but am
just trying to get up
2005 May 13
0
virtual MAC address prefixes
Hi folks,
We''d like to setup a number of virtual servers as xen instances which
would be able to be migrated among physical machines as needed. These
servers would host services such a Grid middleware servers, condor
scheduler head nodes, web servers, etc..
We would need each of these virtual servers to be available to the
outside via a static IP address, and would like to