similar to: Is there some command or alternative using dist.dna in ape package for models not included like GTR?

Displaying 20 results from an estimated 800 matches similar to: "Is there some command or alternative using dist.dna in ape package for models not included like GTR?"

2009 Nov 15
2
lme model specification
Dear all this is a question of model specification in lme which I'd for which I'd greatly appreciate some guidance. Suppose I have data in long format gene treatment rep Y 1 1 1 4.32 1 1 2 4.67 1 1 3 5.09 . . . . . . . . . . . . 1 4 1 3.67 1 4 2 4.64 1 4 3 4.87 .
2011 Oct 12
0
Read in cluster files (cdt, atr, gtr)
Does anyone know if there is a method available to read in cluster files (cdt, atr and gtr)? I found one method (http://bioinformatics.holstegelab.nl/manuals/R/library/integromicsMethods/html/iMethods.read.tv.html), but it doesn't seem to create an object that can be used by "heatmap." The reason I'd like to read in cluster files rather than cluster within R is that we use
2008 Aug 31
3
GTR Evolution - Crashing
ok.. Wine : 1.1.3 Game: GTR Evolution - by Simbin Game loads, can select event's, cannot change car's settings, like ride-height etc, as that screen only shows tte arrows and not the information that changes.. goto drive, and it crashes.. Error below.. Code: physics at physics:~/.wine/drive_c/Program Files/SimBin/GTR Evolution Offline$ wine Race07.exe err:module:import_dll
2007 Apr 06
1
hox to connecte two asterisk server
hi lee. I see your problem with trunk iax, probably i don't have the solution but i don't knew if you can help me to solve mine. i want to connecte two asterisk server: server A and server B. i want make possible calls betwen all asterisk users.: users in server A with sip number 022100 can phone another sip user in server B with number 037100. this is my config:
2008 May 08
3
GTR2 in Ubuntu
Hello, I recently have try to install GTR 2 in Ubuntu. I have wine 0.9.61 installed in Ubuntu 8.04. Could you help me to solve this problem? If you need more details, I am all yours. neoraptor. When I launch the game (installation is ok), I obtain the following message: > fixme:ntdll:NtQuerySystemInformation info_class SYSTEM_HANDLE_INFORMATION > fixme:ntdll:NtQueryObject Unsupported
2011 Jul 22
0
pegas package: Problem using nuc.div and tajima d -> error with dist.dna() -> character variables must be duplicated in .C/.Fortran
Hi, For the last few days I have tried utilise your package "pegas" in order to obtain some values for indices like the nuclear diversity and tajimas d value. I have modified my dataset (a text file containing dna sequences) in order to be able to read it in with the tools provided by pegas. Here, I have oriented myself on the description provided by the help-page in read.loci().
2007 Aug 21
4
how do i use the get function to obtain an element from a list...
my problem can be explained with the following example: x <- 1:12 y <- 13:24 a <- data.frame(x = x, y = y) ## if i write a$x ## it returns [1] 1 2 3 4 5 6 7 8 9 10 11 12 ## but the function get doesn't recognize a$x. Instead it produces the following error: get("a$x") Error in get(x, envir, mode, inherits) : variable "a$x" was not found i intend to do
2017 Mar 13
2
Función Hoy()
Hola, tienes las funciones Sys.date y Sys.time(): https://stat.ethz.ch/R-manual/R-devel/library/base/html/Sys.time.html El lun., 13 mar. 2017 a las 19:45, Freddy Omar López Quintero (< freddy.lopez.quintero en gmail.com>) escribió: > Hola. > > Quizás te funcione alguna variación de date(). > > ¡Salud! > > 2017-03-13 15:08 GMT-03:00 Andres Hirigoyen
2017 Jun 27
2
Problema en lectura de datos. Memoria insuficiente
Si de hecho he utilizado el read_spss por el tema de las labels. Pero obtengo el mismo mensaje de problema de memoria. Antonio 2017-06-27 10:30 GMT-05:00 Freddy Omar López Quintero < freddy.lopez.quintero en gmail.com>: > > 2017-06-27 11:10 GMT-04:00 Antonio Rodriguez Andres < > antoniorodriguezandres70 en gmail.com>: > >> El >> survey solo tiene los datos en
2006 Sep 18
2
problem in font
Hi, after a debian upgrade my dev.copy2eps dont work anymore. I have this message: Error in matchFont(postscriptFonts(family)[[1]], old$encoding) : unknown font I try to change the font family in my .Rprofile: setHook(packageEvent("graphics", "onLoad"), function(...) { grDevices::ps.options(family="ComputerModern") } ) But it no fix
2017 Jun 07
2
Color en líneas (ggplot2)
¡Gracias! Pero al hacerlo R se cae y aparece un "R session aborted"... :-\ ¿Habrá alguna manera manual? 2017-06-07 17:53 GMT-04:00 Carlos Ortega <cof en qualityexcellence.es>: > Hola, > > Para este tipo de ajustes, vaya u otros sobre "ggplot2", este asistente > ayuda mucho a modificar y adaptar la mayor parte de los elementos que > forman un gráfico
2017 Jun 27
2
Problema en lectura de datos. Memoria insuficiente
Freddy Que archivo has intentado leer el del VWS o el de la link que te envié? 2017-06-27 11:33 GMT-05:00 Freddy Omar López Quintero < freddy.lopez.quintero en gmail.com>: > > 2017-06-27 11:42 GMT-04:00 Antonio Rodriguez Andres < > antoniorodriguezandres70 en gmail.com>: > >> Estaba usando el ESS pero me he dado cuenta que si tiene csv, yo lo bajé >> de aquí
2013 Jul 12
0
Eliminar filas que cumplen con mas de un criterios simultaneamente ...
Hola, En vez de utilizar "&" (que es "and") utiliza "|" (que es el "or"): graph <- graph[graph$sol=="lim" *|* graph$dia==2,] Saludos, Carlos Ortega www.qualityexcellence.es El 12 de julio de 2013 23:22, Freddy Omar López Quintero < freddy.vate01@gmail.com> escribió: > Hola de nuevo. Leí mal. Si vas a eliminar esas filas,
2013 Jul 19
0
Resumen de R-help-es, Vol 53, Envío 26
Gracias a todos, finalmente instalando primero el libxml2-dev y luego el dplR, funciono ----- Mensaje original ----- De: r-help-es-request en r-project.org Para: r-help-es en r-project.org Enviados: Miércoles, 17 de Julio 2013 12:59:47 Asunto: Resumen de R-help-es, Vol 53, Envío 26 Envíe los mensajes para la lista R-help-es a r-help-es en r-project.org Para subscribirse o anular su
2015 May 06
2
Resumen de R-help-es, Vol 75, Envío 7
Hola, me sorprende leer tu opinión ("R (puro) no es la herramienta ideal para el manejo directo del 'big data'") cuando precisamente este pasado mes de abril SparkR (ver descripción de su web más abajo) se ha integrado en Apache Spark y todo el mundo que está en "ese ajo" del "big data" (buzzword donde las haya) no le quita ojo a la publicación oficial este
2003 Sep 20
4
persp graphs
Hi, I am doing my way on R, with much experimenting. So, I am trying to plot a 3d graphic ussing "persp" and entering a data set (attached) of UTM coordinates as x,y and a pH values as z. However when I try an error message comes out telling that increasing x and y values are expected. Jus ordering the first vector does not help, and, of course, order the first two independently
2017 Jun 27
2
Problema en lectura de datos. Memoria insuficiente
Estaba usando el ESS pero me he dado cuenta que si tiene csv, yo lo bajé de aquí en formato SPSS pero me da el error de falta de memoria http://www.europeansocialsurvey.org/downloadwizard/ 2017-06-27 10:38 GMT-05:00 Freddy Omar López Quintero < freddy.lopez.quintero en gmail.com>: > > 2017-06-27 11:34 GMT-04:00 Antonio Rodriguez Andres < > antoniorodriguezandres70 en
2007 Apr 23
1
help on xyplot and curves
Hi, I need to add some different curves to a each panel in a xyplot. I have a old function to make this using panel.number, like this: panel=function(x,y,panel.number,...){ panel.xyplot(x,y,...) if(panel.number==1){ panel.curve(-655.8689+769.1589*log(5)+64.7981*log(x)-206.4475*log(5)^2) } if(panel.number==2){
2007 Feb 22
1
problem with weights on lmer function
Hi, I try to make a model using lmer, but the weigths is not accept. m1<-lmer(ocup/total~tempo+(tempo|estacao),family=binomial,weights=total) Erro em lmer(ocup/total ~ tempo + (tempo | estacao), family = binomial, : object `weights' of incorrect type I dont understand why this error, with glm this work. the total object is a vector. Any idea? Thanks Ronaldo -- God is subtle, but
2007 Feb 22
1
JGR launcher for linux
Hi, anybody have a JGR launcher for linux? Maybe a script that launch JGR directly without open R then library(JGR) and JGR(). Thanks Ronaldo -- Deflector shields just came on, Captain. -- > Prof. Ronaldo Reis J?nior | .''`. UNIMONTES/Depto. Biologia Geral/Lab. Ecologia Evolutiva | : :' : Campus Universit?rio Prof. Darcy Ribeiro, Vila Mauric?ia | `. `'` CP: 126, CEP: