similar to: Cairo device won't output the PNG

Dear all, I noticed in the latest R version (R.2.12.1) that the readPNG gives following warning when running the example code in the help file (or when using any other png for that matter) : 50: In rasterImage(img, 1.2, 1.27, 1.8, 1.73) : Per-pixel alpha not supported on this device No picture is shown, and code I used to be able to run, doesn't run any more. > sessionInfo() R version

Hi all! I've got this error while running example(Glm) library("rms") > example(Glm) Glm> ## Dobson (1990) Page 93: Randomized Controlled Trial : Glm> counts <- c(18,17,15,20,10,20,25,13,12) Glm> outcome <- gl(3,1,9) Glm> treatment <- gl(3,3) Glm> f <- glm(counts ~ outcome + treatment, family=poisson()) Glm> f Call: glm(formula = counts ~

Dear all, Sweave chokes when using "\\" in the path to the Rnw file. Using "/" works fine. The problem is that Eclipse+StatET uses "\\" in the filename. And example of the error, traceback and sessionInfo are given below. Best regards, Thierry > Sweave("Q:\\BMK\\cursussen\\interne_opleiding\\deelnemerslijst.Rnw", syntax="SweaveSyntaxNoweb")

Dear All I have a problem with the height of the boxes in the key in the following. (The text is over 2 lines to accentuate the problem of no space between the rectangles.) Is there an easy way to put a space between the rectangles; size controls the width but there appears to be nothing for the height? xyplot(1~1, key = list(corner = c(0.8,0.8),

Hi I have a long data set on which I want to do Bland-Altman style plots for each rhythm type Using ggplot2, when I use geom_hline with facet_grid I get an extra set of empty panels. I can't get it to do it with the "Diamonds" data supplied with the package so here is a (much abbreviated) example: > lvexs cvd_basestudy ecd_rhythm fixed_time variable_time 1 CBP05J02

Dear all, I am trying to use the Cairo package to avoid some X11 issues and it works very well. However, when I want to add a legend to my plots, I receive an error message from Cairo: > library(Cairo) > CairoPNG(file="test.png") > plot(1:100) > dev.off() null device 1 This works fine. But: > CairoPNG(file="test.png") > plot(1:100) >

Hi all, I am trying to download, decompress and read a csv file. My code: myurl <- "ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE24729/GSE24729_MitoNuclear_suppl_male_stats.csv.gz" # myfile <- "GSE24729_MitoNuclear_suppl_male_stats.csv.gz" # download.file(myurl, destfile=myfile, mode="w") # mycon <- gzcon(gzfile(myfile,

If I run the following: > windows() > > bringToTop(-1) > > interactive() [1] TRUE > > run <- readline(prompt = "Continue (Yes = 1, No = 2):") Continue (Yes = 1, No = 2): > dummy <- 1 > run [1] "" it does not allow user input though the session is interactive (it jumps right over the readline command). It would be great

My day for dumb questions. How do I increase the type size in the Rgui console in Windows? (R-2.13.0, Windows 7) It looked to me that I just needed to change the font spec in Rconsole but that does not seem to be working. The R FAQ for Windows has a reference in Q3.4 to changing fonts, (Q5.2), but I don't see anything relevant there. Rconsole originally was: font = TT Courier New points =

Dear all, I was intrigued by the ctree command and wanted to check it out. I first ran the demo with example(ctree) and did get the survival graphs in the end. Upon doing this with my own data and yielding a "Invalid operation on a survival time" I tried to rerun example(ctree) and now I also get "Invalid operation on a survival time" after the example runs plot(GBSG2ct)...

I am new to using odfWeave but I have encountered a problem running both the example in the help file as well as another file.? I am not sure how to correct the error. First example: library(odfWeave) filein <- 'c:\\my documents\\example01_in.odt' fileout <- 'c:\\my documents\\example01.odt' odfWeave(filein, fileout, control = odfWeaveControl(cleanup = T)) error:

I am new to using odfWeave but I have encountered a problem running both the example in the help file as well as another file. I am not sure how to correct the error. First example: library(odfWeave) filein <- 'c:\\my documents\\example01_in.odt' fileout <- 'c:\\my documents\\example01.odt' odfWeave(filein, fileout, control = odfWeaveControl(cleanup = T)) error:

Hello all, I am manipulating a large database with 70,000 records. "strptime" generates a date variable but R treats some of the values as NA. I attach a simple example below. I have spent hours on this problem. Any hint would be greatly appreciated. Many thanks, Edwin Sun # =======start of sample code ============= > x <- c("2005-04-02 19:03:00", "2005-04-03

Clearly, I don't understand what order() is doing and as ususl the help for order seems to only confuse me more. For some reason I just don't follow the examples there. I must be missing something about the data frame sort there but what? I originally wanted to reverse-order my data frame df1 (see below) by aa (a factor) but since this was not working I decided to simplify and order by

Dear all, ggplot gives me an error when trying to plot time series data using a date variable as the x axis. g<-structure(list(Date = c("2011-12-23", "2011-12-30", "2012-01-06", "2011-12-23", "2011-12-30", "2012-01-06", "2011-12-23", "2011-12-30", "2012-01-06"), variable = structure(c(1L, 1L, 1L, 2L, 2L,

Hi, on Windows XP Pro with R version 2.7.1 Patched (2008-06-27 r46012) the 'Cairo' and the 'EBImage' packages does not play well together. Loading EBImage before Cairo cause the following to happen: # Rterm --vanilla > library(EBImage); > library(Cairo) Error in inDL(x, as.logical(local), as.logical(now), ...) : unable to load shared library

Hello dear R help group, I am trying to read a .txt file, with Hebrew column names, while keeping the column names looking well in R - but without success. I uploaded an example file to: http://www.talgalili.com/files/aa.txt And am trying the command: read.table("http://www.talgalili.com/files/aa.txt", header = T, sep = "\t") This returns me with: X.....ª X...ª......

Folks, I have some weekly dataseries that I convert to monthly xts (with yearmon indices), and obtain the two following extracts: > str(sig) An 'xts' object from Apr 1998 to Sep 1998 containing: Data: num [1:6, 1] 0.0083 0.2799 -0.2524 -0.0119 0.18 ... - attr(*, "dimnames")=List of 2 ..$ : NULL ..$ : chr "e1" Indexed by objects of class: [yearmon] TZ:

I am trying to install the Cairo package on a linux machine, the Cairo package did not install correctly (could not find cairo.h), I am new to R and linux any help on the installation would be great. Below are output from trying to install the Cairo package, thought this might help. > install.packages("Cairo") Warning in install.packages("Cairo") : argument

Hello, I would like to fit correlation structures with nlme, but R crashes. My data is similar to the "growth of orange trees" example from Pinheiro and Bates (2000), but data are not equally spaced in time, as the last observation is taken after 6 days ( and not 2 as the others). This is the code I'm using: library(nlme)