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...format of the data to be analyzed. Operating System: Windows XP (SP2) R version: R-2.0.1 The following example causes a crash of R: # univariate example require(mclust) X <- c(rnorm(100, mean=1), rnorm(100, mean=5)) # I also tried: X <- as.matrix(c(rnorm(100, mean=1), rnorm(100, mean=5))) Xmap <- cbind(c(rep(1, 100), rep(0, 100)), c(rep(0, 100), rep(1, 100))) Xm <- mstep(modelName="V", data=X, z=Xmap) # CRASH: em(modelName=Xm$modelName, data=X, mu=Xm$mu, sigmasq=Xm$sigmasq, pro=Xm$pro) For bivariate data the following example works: # bivariate example require(mclust) Y...

...y0[i%ny0])) && FINITE(xt(x1[i%nx1])) && FINITE(yt(y1[i%ny1]))) { GP->col = INTEGER(col)[i % ncol]; if(GP->col == NA_INTEGER) GP->col = colsave; GP->lty = INTEGER(lty)[i % nlty]; GStartPath(); GMoveTo(XMAP(xt(x0[i % nx0])), YMAP(yt(y0[i % ny0]))); GLineTo(XMAP(xt(x1[i % nx1])), YMAP(yt(y1[i % ny1]))); GEndPath(); } } 2) rect() does not work either. Unfortunately, do_rect() in "plot.c" overrides the yt() function... What about this (lines 983-1031): SEX...

...rom Affymetrix microarray experiments. We are an interdisciplinary team that brings together skills in computer science, biology and mathematics, and are focused on the development and application of bioinformatics tools to support the interpretation of complex datasets (see, for example, http://xmap.picr.man.ac.uk <http://xmap.picr.man.ac.uk/> ). The ideal candidate will be excited by the interface between computer science, mathematics and biology, and will have a strong desire to see their work applied directly in collaboration with both bench-scientists and clinicians. Significant prog...

...max_num_boxes_exponent) x<-read.csv(outputfilename,header=TRUE) #isolate row/col frequencies as a matrix. we need to look at # both to get the complete list of pairs and their respective frequencies xtable<-table(x$X.var) ytable<-table(x$Y.var) #map frequencies of X & Y vars to rows xmap<-xtable[x$X.var] ymap<-ytable[x$Y.var] finalmap<-order(xmap,-ymap,decreasing=TRUE) #fill in matrix - we want the third column for MIC z<-diag(length(levels(x$X.var))+1) z[row(z)>col(z)]<-x[finalmap,3] z<-z+t(z) diag(z)<-1 #determine and set row/column names varnames<-c(na...

I have a SunRay server that I am looking at to determine some sizing requirements in my department. The machine has 16G of ram and 10G of swap. Currently, I have about 4G of swap used. I am wondering if dtrace/mdb can be used to find out what lwp/processes have been swapped out? Any hints? This message posted from opensolaris.org

...rom Affymetrix microarray experiments. We are an interdisciplinary team that brings together skills in computer science, biology and mathematics, and are focused on the development and application of bioinformatics tools to support the interpretation of complex datasets (see, for example, http://xmap.picr.man.ac.uk ). The ideal candidate will be excited by the interface between computer science, mathematics and biology, and will have a strong desire to see their work applied directly in collaboration with both bench-scientists and clinicians. Significant programming experience is a pre-requisit...

Hi, We're looking for a number of people to join our group (Applied Computational Biology and Bioinformatics -- ACBB) and applying state of the art techniques (see for example, xmap.picr.man.ac.uk) to integrate, analyse and interpret datasets arising from the latest generation of microarrays (including exon, SNP and tiling arrays), quantitative mass-spectrometry and next generation sequencing. We write a lot of Bioconductor and R code - hence my posting to this list... I'...

...; > > /* Make the window */ > window = XCreateSimpleWindow (display, RootWindow(display, screen), > 0, 0, hwidth, hheight,0,0,0); > > XSelectInput(display, window, KeyPressMask | StructureNotifyMask); > > /* Map window. */ > > XMapWindow(display, window); > > /* Wait for map. */ > do > { > XNextEvent(display, &xev); > } > while (xev.type != MapNotify || xev.xmap.event != window); > > gc = DefaultGC(display, screen); > > yuv_height = hheight; > yuv_width = hwidth; &gt...

...; > > /* Make the window */ > window = XCreateSimpleWindow (display, RootWindow(display, screen), > 0, 0, hwidth, hheight,0,0,0); > > XSelectInput(display, window, KeyPressMask | StructureNotifyMask); > > /* Map window. */ > > XMapWindow(display, window); > > /* Wait for map. */ > do > { > XNextEvent(display, &xev); > } > while (xev.type != MapNotify || xev.xmap.event != window); > > gc = DefaultGC(display, screen); > > yuv_height = hheight; > yuv_width = hwidth; &gt...

...409, border_width = 0, override_redirect = 0}, xdestroywindow = { type = 16, serial = 10885, send_event = 0, display = 0x6481b0, event = 421, window = 20989986}, xunmap = {type = 16, serial = 10885, send_event = 0, display = 0x6481b0, event = 421, window = 20989986, from_configure = 320}, xmap = {type = 16, serial = 10885, send_event = 0, display = 0x6481b0, event = 421, window = 20989986, override_redirect = 320}, xmaprequest = {type = 16, serial = 10885, send_event = 0, display = 0x6481b0, parent = 421, window = 20989986}, xreparent = {type = 16, serial = 10885, send_event...

My machine has 8GB memory. I had quit all other programs that might take a lot of memory when I try the script (before I post the first message in this thread). The cdf file is of only 741 MB. It is strange to me to see the error. On Mon, Dec 28, 2009 at 2:38 AM, Wolfgang Huber <whuber at embl.de> wrote: > Dear Peng Yu > > how big is the RAM of your computer? You could try with