search for: vsn2

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2007 Nov 13
0
Difficult to set a quiet formula in maanova
...oth varieties. So, I have: Var: 2 (varieties) Trat: 2 (treatment) Time: 3 Sample: 3 (biological replicate) Probes: 3575 Spots: 2 for each probe I used the following code: > library(vsn) > todos <- read.matrix("todos_v1_e_v2_back_c.txt",sep="\t") > todos.norm <- vsn2(todos) > write.table(exprs(todos.norm),"todos.norm.txt",sep="\t") > library(maanova) > fabiana.raw <- read.madata("todos.norm.vsn2.maanova.txt", designfile="design.txt", header=TRUE, spotflag=FALSE,CloneID=1,metarow=2, metacol=3, pmt=4) > fabia...