search for: tsakai

Hi Tena, I recommend rapache for building websites with R. See http://biostat.mc.vanderbilt.edu/rapache/ -Ista > ---------- Forwarded message ---------- > From: "Tena Sakai" <tsakai at gallo.ucsf.edu> > To: <ted.harding at manchester.ac.uk>, <r-help at r-project.org> > Date: Tue, 28 Apr 2009 15:04:53 -0700 > Subject: Re: [R] Newbie R question PART2 > Hi, > > Many thanks to Wacek Kusnierczyk and Ted Harding. > > I learned 3 new tricks. (N...

...en making a shared object; recompile with -fPIC CConverters.o: could not read symbols: Bad value collect2: ld returned 1 exit status It saysm "recompile with -fPIC" But I am already doing so, am I not? What am I doing wrong here? Any help would be appreciated. Regards, Tena Sakai tsakai@gallo.ucsf.edu [[alternative HTML version deleted]]

...ent working directory.) and bingo! Yeeehaa! My page suddenly looks so much nicer! So, here's today's newbie quesion: How can I get R to insert such line into the head section of html file being generated under hwriter? I would appreciate your guidance. Thank you. Regards, Tena Sakai tsakai@gallo.ucsf.edu [[alternative HTML version deleted]]

...''Rmpi'' ) Error in library("Rmpi") : there is no package called ''Rmpi'' > I think it is upset because the file mpi.h is missing. Am I right? If so, How would I cure this problem? And if not, what must I do? Please help. Thank you. Tena Sakai tsakai@gallo.ucsf.edu [[alternative HTML version deleted]]

...little r. The installation material stated to look for libR.so, and I want to make sure that the one I installed (2.9.0) is used by little r. Would someone please clue me in? Why don't I have libR.so and yet when I execute ./bin/R it says: R version 2.9.0 (2009-04-17) Regards, Tena Sakai tsakai@gallo.ucsf.edu [[alternative HTML version deleted]]

...rary/Biobase' It is choking at not finding a function "numeric_version". Has anybody seen this before and have any insight to the solution? I would appreciate a bit of helping hand. The platform I am on is Dell 64-bit server, running redhat enterprise server. Regards, Tena Sakai tsakai@gallo.ucsf.edu [[alternative HTML version deleted]]

...is not supported on this device: reported only once per page The entire record of installing ggplot2 package, ending up with the line above is in the attached file. I would think this should be reproducible with anybody else. If you have any other suggestion, I am all ears. Regards, Tena Sakai tsakai at gallo.ucsf.edu -----Original Message----- From: Ian Fellows [mailto:ifellows at gmail.com] Sent: Tue 5/5/2009 11:43 PM To: Tena Sakai Subject: Re: I updated/reinstalled ggplot2 and the trouble started... Tena, May I suggest that you do a full clean install of R 2.9.0, then install ggplot2 f...

...t ('Hello World!\n') I execute this file as: R --no-save < barebone.R And it does what I expect. What I get is 20+/- lines of text, one of which is 'Hello World!'. How would I go about getting rid of all but the line I am after, 'Hello World!'? Regards, Tena Sakai tsakai@gallo.ucsf.edu [[alternative HTML version deleted]]

...#39;tmp.html') It worked fine a few days ago, but now it says: r: error while loading shared libraries: libR.so: cannot open shared object file: No such file or directory The big brother (R) has no problem. Can somebody please tell me what's going on? Thank you. Regards, Tena Sakai tsakai@gallo.ucsf.edu [[alternative HTML version deleted]]

...but when I tested it with: /usr/sbin/chroot /mnt/ami-centos5.5-64bit-base R It told me: /bin/R: line 217: /mnt/ami-centos5.5-64bit-base/lib64/R/etc/ldpaths: No such file or directory Question: How can I direct ldpaths file into this directory? Thank you for your help. Regards, Tena Sakai tsakai@gallo.ucsf.edu [[alternative HTML version deleted]]

...picious mind tells me maybe lib.loc in the line: file <- system.file("CONTENTS", package = pkg, lib.loc = lib.loc) should be be changed to: lib.loc = '/usr/local/lib64/R/library' Can anyone please clue me in? Any tip would be appreciated. Thank you. Regards, Tena Sakai tsakai@gallo.ucsf.edu [[alternative HTML version deleted]]

...> install.packages(lib='/usr/local/apps/R-2.8.1/lib64/R/library', "pbatR") it detects lack of rootSolve package and attempts to install it. But cannot seem to compile it, and the rest is aborted. Any hint as to what I can do? Thank you in advance for your help. Tena Sakai tsakai at gallo.ucsf.edu Here's the detail: > install.packages(lib='/usr/local/apps/R-2.8.1/lib64/R/library', "pbatR") --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done also installing the dependency ?rootSolve? trying URL 'http:/...