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tibshirani
2008 Apr 01
0
PAMR package question: How to plot Estimated probabilities for the training data and test data
Hi,
I have tried some time trying to figure out how to use pamr to plot multiclass
Estimated probabilities for the training data and test data?
Specifically, how to recreate the PAMR publication on PNAS with
Tibshrani et al. The publication is as attached. The plot I want to
do is Figure 5.
I have downloaded the pamr package and the function which gives
similar plot is pamr.plotcvprob but this is different from plot
estimated probability.
There is one function pamr.xl.plotcvprob.compute sounds like th...