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Hi, Has something changed regarding the useDynLib in the NAMESPACE file in packages? I've written a package that works in e.g. 2.12/2.13 but simply cannot find the dynamic library under windows. The version on CRAN is older than the one I'm talking about and depends on a newer version of R but I want to make the package available to people with older versions. >

...All, I have been trying to compile a package for windows that we have written. Since R version 3.0.0 the package doesn't compile any more. (On Linux the package compiles without errors). The error specifically says: gcc -m32 -I"C:/PROGRA~1/R/R-30~1.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c galgoDistance.c -o galgoDistance.o gcc -m32 -I"C:/PROGRA~1/R/R-30~1.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c galgo_fitness...

...coming up against - what I believe - is a linker configuration issue. For example, using has_develop() gives the following message... > has_devel() "C:/PROGRA~1/R/R-30~1.2/bin/i386/R" --vanilla CMD SHLIB foo.c gcc -m32 -I"C:/PROGRA~1/R/R-30~1.2/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c foo.c -o foo.o gcc -m32 -shared -s -static-libgcc -o foo.dll tmp.def foo.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LC:/PROGRA~1/R/R-30~1.2/bin/i386 -lR collect2: l...

..many thanks, no it works until he didn't find hhc.exe (..but the path to HTMLHelpWorkshop should be correct !?) and break down, ok i just check all path settings and find a solution for my self ! But here another problem: ...modify without the MkRules in my current binary R.1.6.1\src\gnuwin32 C:\DataMining\rw1061\library>Rcmd INSTALL Oop make: Entering directory

...Rstudio I get these errors: ==> Rcmd.exe INSTALL --no-multiarch --with-keep.source MyPi * installing to library 'C:/Users/IMartinez/Documents/R/R-3.2.1/library'* installing *source* package 'MyPi' ...** libs gfortran -m64 -shared -s -static-libgcc -o MyPi.dll tmp.def Fpi.o -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -LC:/Users/IMARTI~1/DOCUME~1/R/R-32~1.1/bin/x64 -lR Fpi.o: In function `__fortranpi_MOD_dboard': Fpi.f90:(.text+0xd7): undefined reference to `__stack_chk_fail' Fpi.o: In function `pi_': Fpi.f90:(.text+0x249...

...rning" turns off this warning. Consult the user's guide for more details about POSIX paths: http://cygwin.com/cygwin-ug-net/using.html#using-pathnames gcc -m64 -I"C:/PROGRA~1/R/R-215~1.1/include" -DNDEBUG -I"C:/Program Files/MySQL/MySQL Server 5.5"/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c RS-DBI.c -o RS-DBI.o RS-DBI.c: In function 'RS_na_set': RS-DBI.c:1219:11: warning: variable 'c' set but not used [-Wunused-but-set-variable] gcc -m64 -I"C:/PROGRA~1/R/R-215~1.1/include" -DNDEBUG...

...tic-libgcc -o test.dll tmp.def testR.o ../../../win32/test_win32.lib -lgfortran -LC:/PROGRA~1/R/R-215~1.0/bin/i386 -lR installing to C:/JohnsWork/test/make/R/test.Rcheck/test/libs/i386 *** arch - x64 gcc -m64 -I"C:/PROGRA~1/R/R-215~1.0/include" -DNDEBUG -I/JohnsWork/test/src -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c testR.c -o testR.o gcc -m64 -shared -s -static-libgcc -o test.dll tmp.def testR.o ../../../win64/test_win64.lib -lgfortran -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -L...

...S=-O3 # added all: $(SHLIB) # no change mv $(SHLIB) datatable$(SHLIB_EXT) # no change ==== but -O2 still appears in winbuilder's install.out (after -O3, and I believe the last -O is the one that counts) : gcc -m64 -I"D:/RCompile/recent/R-2.15.2/include" -DNDEBUG -I"d:/Rcompile/CRANpkg/extralibs215/local215/include" -O3 -O2 -Wall -std=gnu99 -mtune=core2 -c dogroups.c -o dogroups.o How can I ensure that data.table is compiled with -O3 on Win64? Thanks, Matthew

...a Fortran 77 subroutine (dll). On windows XP, how ?would I 'debug it(Fortran) within R' using gdb? This is how I made it. ---------------------- R CMD SHLIB main.f gfortran -m32 ? ? -O3 ?-mtune=core2 -c main.f -o main.o gcc -m32 -shared -s -static-libgcc -o main.dll tmp.def main.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -lgfortran -LF:/ProgramFiles/R/R-3.1.1/bin/i386 -lR Here is the contents of the file ?main.f ----------------------------------------- ? ? ? SUBROUTINE NGCD(NA, NB, NGCDO)? ? ? ? ? IA = NA ? ? ? ? IB = NB ? ? 1 ? IF (...

...ls\bin;C:\Rtools\gcc-4.6.3;C:\Program Files\R\R-3.1.1\bin\*x64*;", opened Cygwin again and typed "RCMD SHLIB Permutation.c" in Cygwin. Error message appeared on Cywin console. $ RCMD SHLIB Permutation.c gcc -m64 -shared -s -static-libgcc -o Permutation.dll tmp.def Permutation.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LC:/PROGRA~1/R/R-31~1.1/bin/x64 -lR C:/PROGRA~1/R/R-31~1.1/bin/x64/R.dll: file not recognized: My version of R is the latest 3.1.1 and my Rtools is also the latest version 31 I am not sure why this is happening and I h...

...rseSimple, printSpMatrix, printSpMatrix2, qrR, rankMatrix, readHB, readMM, sparse.model.matrix, sparseVector, symmpart, skewpart, tril, triu, updown, pack, unpack, .updateCHMfactor, .validateCsparse, writeMM, cBind, rBind ERROR: lazy loading failed for package 'rockchalk' * removing 'd:/Rcompile/CRANpkg/lib/3.4/rockchalk' * restoring previous 'd:/Rcompile/CRANpkg/lib/3.4/rockchalk' -- Paul E. Johnson http://pj.freefaculty.org Director, Center for Research Methods and Data Analysis http://crmda.ku.edu To write to me directly, please address me at pauljohn at ku.edu.

...back from Uwe saying that the most recent version of psych failed to pass R CMD check for Windows. The error message was less than helpful, in that it seems to have failed when trying to include the Rcpp library, which I do not directly call. (see below) "* using log directory 'd:/Rcompile/CRANpkg/local/2.11/psych.Rcheck' * using R version 2.11.1 (2010-05-31) * using session charset: ISO8859-1 * checking for file 'psych/DESCRIPTION' ... OK * this is package 'psych' version '1.0-90' * checking package name space information ... OK * checking package depende...

...makefile located in the 'src' folder. Any comment will be appreciated, Maxime NB: Here is the compilation error: _____________________________________________________________________________(__ * installing *source* package 'pksmooth' ... ** libs making DLL ... g++ -I"d:/Rcompile/recent/R-2.10.1/include" -O2 -Wall -c ksmoothC.C -o ksmoothC.o ksmoothC.C: In function 'double fxRoot(double (*)(double), double, double)': ksmoothC.C:16: warning: 'root' may be used uninitialized in this function g++ -shared -s -o pksmooth.dll tmp.def ksmoothC.o -Ld:/R...

...> ==> Rcmd.exe INSTALL --no-multiarch --with-keep.source MyPi > * installing to library > 'C:/Users/IMartinez/Documents/R/R-3.2.1/library'* installing *source* > package 'MyPi' ...** libs > gfortran -m64 -shared -s -static-libgcc -o MyPi.dll tmp.def Fpi.o > -Ld:/RCompile/r-compiling/local/local320/lib/x64 > -Ld:/RCompile/r-compiling/local/local320/lib > -LC:/Users/IMARTI~1/DOCUME~1/R/R-32~1.1/bin/x64 -lR > Fpi.o: In function `__fortranpi_MOD_dboard': > Fpi.f90:(.text+0xd7): undefined reference to `__stack_chk_fail' > Fpi.o: In function `pi_...

...05AD.o TF01MD.o TF01MX.o TF01MY.o TF01ND.o TF01OD.o TF01PD.o TF01QD.o TF01RD.o TG01AD.o TG01AZ.o TG01BD.o TG01CD.o TG01DD.o TG01ED.o TG01FD.o TG01FZ.o TG01HD.o TG01HX.o TG01HY.o TG01ID.o TG01JD.o TG01JY.o TG01WD.o UD01BD.o UD01CD.o UD01DD.o UD01MD.o UD01MZ.o UD01ND.o UE01MD.o delctg.o select.o -LD:/RCompile/recent/R-3.1.1/bin/i386 -lRlapack -LD:/RCompile/recent/R-3.1.1/bin/i386 -lRblas -lgfortran -Ld:/Rcompile/CRANpkg/extralibs215/local215/lib/i386 -Ld:/Rcompile/CRANpkg/extralibs215/local215/lib -lgfortran -LD:/RCompile/recent/R-3.1.1/bin/i386 -lR AB08NZ.o:AB08NZ.f:(.text+0x658): undefined reference t...

...vm_dmexp.o cvm_dpoly.o cvm_globals.o cvm_icamax.o cvm_icamin.o cvm_idamax.o cvm_idamin.o cvm_infnm.o cvm_isamax.o cvm_isamin.o cvm_izamax.o cvm_izamin.o cvm_npoly.o cvm_rmatrix.o cvm_rvector.o cvm_scalm.o cvm_scmatrix.o cvm_smexp.o cvm_spoly.o cvm_srmatrix.o cvm_utils.o cvm_zmexp.o cvm_zpoly.o -Ld:/Rcompile/recent/R-29~1.1/bin -lRlapack -Ld:/Rcompile/recent/R-29~1.1/bin -lRblas -lgfortran -lgfortran -Ld:/Rcompile/recent/R-29~1.1/bin -lR cvm_arrays.o:cvm_arrays.cpp:(.text+0xf2): undefined reference to `sscal_' cvm_arrays.o:cvm_arrays.cpp:(.text+0x1e2): undefined reference to `cscal_' cvm_array...

...my compiling procedure ? make make bitmapdll make tcl make docs (..first i get the error message for Latex3.0 so that i'm update my miktex installation, after this doing again i'm getting no error !) After "make docs" i should change directory to R-1.6.2/doc and type: C:\Rcompile\R-1.6.2\doc>make -f Makefile.win info make: Makefile.win: No such file or directory make: *** No rule to make target `Makefile.win'. Stop. P.S. Rgui.exe works, but the "packages-html-help" files are corrupt !? many thanks for suggestions christian

...: END_RCPP 34 : } 35 : 36 : Compilation argument: C:/R_curr/R_2_15_0/bin/x64/R CMD SHLIB file10bc7da0783e.cpp 2> file10bc7da0783e.cpp.err.txt g++ -m64 -I"C:/R_curr/R_2_15_0/include" -DNDEBUG -I"C:/Users/Owe/Documents/R/win-library/2.15/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c file10bc7da0783e.cpp -o file10bc7da0783e.o g++ -m64 -shared -s -static-libgcc -o file10bc7da0783e.dll tmp.def file10bc7da0783e.o C:/Users/Owe/Documents/R/win-library/2.15/Rcpp/lib/x64/libRcpp.a -Ld:/RCompile/CRANpkg/extralibs64/...

...rning" turns off this warning. Consult the user's guide for more details about POSIX paths: http://cygwin.com/cygwin-ug-net/using.html#using-pathnames gcc -m64 -I"C:/PROGRA~1/R/R-214~1.2/include" -I"C:\Program Files\MySQL\MySQL Server 5.5\.;"/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c RS-DBI.c -o RS-DBI.o RS-DBI.c: In function 'RS_na_set': RS-DBI.c:1219:11: warning: variable 'c' set but not used [-Wunused-but-set-variable] gcc -m64 -I"C:/PROGRA~1/R/R-214~1.2/include" -I&qu...

...> qrR, rankMatrix, readHB, readMM, sparse.model.matrix, sparseVector, > symmpart, skewpart, tril, triu, updown, pack, unpack, > .updateCHMfactor, .validateCsparse, writeMM, cBind, rBind > ERROR: lazy loading failed for package 'rockchalk' > * removing 'd:/Rcompile/CRANpkg/lib/3.4/rockchalk' > * restoring previous 'd:/Rcompile/CRANpkg/lib/3.4/rockchalk' all of these these are names of Matrix-package objects.. and I know that yesterday Matrix package version changes (1.1-11 --> 1.1-12) happened on CRAN and hence in servers which update....