Displaying 5 results from an estimated 5 matches for "rawp".
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2007 Jun 14
1
Wilcoxon test on data matrix
...ed test on the data from class 0 versus the data from class 1, for each row (gene) of the data set.
My first try:
#to make separate matrices for both classes:
data.matrix.0 <- data.matrix[,data.cl==0]
data.matrix.1 <- data.matrix[,data.cl==1]
# to run the wilcox.test function for each row:
rawp <- apply(data.matrix.0, 1, wilcox.test, y=data.matrix.1, alternative="less")
The result of printing rawp is:
$`1`
Wilcoxon rank sum test with continuity correction
data: newX[, i] and data.matrix.1
W = 7585, p-value = 1
alternative hypothesis: true location shift is less than 0...
2012 Mar 15
1
substituting own test statistics in a built-in function
Hi All
I would like to compute the raw p-value from permutation tests and I found
mt.sample.rawp() from the package multtest almost similar to what I want to
do. But in the function definition:
mt.sample.rawp(V,classlabel,test="t",side="abs",fixed.seed.sampling="y",B=10000,na=.mt.naNUM,nonpara="n")
I would like to choose my own t-test which is design...
2010 Mar 03
1
Help with multtest (rawp2adjp)
Hello R experts,
I am trying to analyze this dataset and am stuck on this problem for quite
some time now.
I am using mt.rawp2adjp.
the output that came out was a matrix with two colums since I had asked it
to calculate the adjusted p values using one method.
so it has the two columns as: rawp BH
I combined these using cbind with my actual dataframe.
checked using head all was fine.
thereafter I am trying to extract the...
2013 Mar 28
2
[Bridge] [PATCH v2] net: add ETH_P_802_3_MIN
...coming_packet(struct net_device *net,
if (memcmp(eth->h_dest, net->dev_addr, net->addr_len))
skb->pkt_type = PACKET_OTHERHOST;
}
- if (ntohs(eth->h_proto) >= 1536) {
+ if (ntohs(eth->h_proto) >= ETH_P_802_3_MIN) {
protocol = eth->h_proto;
} else {
rawp = (u16 *)skb->data;
diff --git a/drivers/isdn/i4l/isdn_net.c b/drivers/isdn/i4l/isdn_net.c
index babc621..88d657d 100644
--- a/drivers/isdn/i4l/isdn_net.c
+++ b/drivers/isdn/i4l/isdn_net.c
@@ -1385,7 +1385,7 @@ isdn_net_type_trans(struct sk_buff *skb, struct net_device *dev)
if (memcmp(eth-&g...
2008 Mar 01
2
Newbie: Incorrect number of dimensions
> dim(data.sub)
[1] 10000 140
#####extracting all differentially express genes##########
library(multtest)
two_side<- (1-pt(abs(data.sub),50))*2
diff<- mt.rawp2adjp(two_side)
all_differ<-diff[[1]][37211:10000,]
all_differ
#####list of differentially expressed genes##########
> probe.names<-
+ all_differ[[2]][all_differ[[1]][,"BY"]<=0.01]
Error in all_differ[[1]][, "BY"] : incorrect number of dimensions
Hi,
I am pretty n...