search for: ptukey

I am embarrassed to have to ask this but can anyone tell me of a Tukey multiple comparisons procedure available for R? I have looked through the search page, through the FAQ, and in the index of V&R (1999), and I still can't find such a thing. I see there is a ptukey function and a qtukey function but that is as far as I got. Do I need to roll my own? -- Douglas Bates bates at stat.wisc.edu Statistics Department 608/262-2598 University of Wisconsin - Madison http://www.stat.wisc.edu/~bates/ -.-.-.-.-.-.-.-....

...avorite email program and send it to # # r-bugs at r-project.org # ###################################################### This report is joint from Richard Heiberger <rmh at temple.edu> and Burt Holland <bholland at temple.edu>. Burt Holland is the coauthor of the paper that the ?ptukey documentation references. R was used to run an example in our elementary Stat course. It was a one-way ANOVA, the factor `strategy' having 3 levels Price, Quality and Convenience. We issued the command summary(simint(sales ~ strategy, type="Tukey", data=Xm15.01s)) and receiv...

...bull.o fmax2.o fmin2.o ftrunc.o gamma.o gamma_cody.o i1mach.o imax2.o imin2.o lbeta.o lgamma.o lgammacor.o mlutils.o pbeta.o pbinom.o pcauchy.o pchisq.o pexp.o pf.o pgamma.o pgeom.o phyper.o plnorm.o plogis.o pnbeta.o pnbinom.o pnchisq.o pnf.o pnmath.o pnorm.o pnt.o polygamma.o ppois.o pt.o ptukey.o punif.o pweibull.o qbeta.o qbinom.o qcauchy.o qchisq.o qexp.o qf.o qgamma.o qgeom.o qhyper.o qlnorm.o qlogis.o qnbeta.o qnbinom.o qnchisq.o qnf.o qnorm.o qnt.o qpois.o qt.o qtukey.o qunif.o qweibull.o sign.o stirlerr.o toms708.o -lgomp -F/Library/Frameworks/R.framework/.. - framework R...

Dear all, I'm using R to perform multiple comparison testing on agriculture genotype trials. To perform the Duncan's MRT, I use the qtukey() function with the following syntax: qtukey(p = ((1 - 0.05) ^ (pos - 1)), nmeans = pos, df = ni) I experience a strange behaviour when the number of means in the trial and the number of residual degrees of freedom (ni) becomes high

I am not sure if my message made it through, so here it is again! Hi Rer's, R-1.1.0 I have two questions for you: 1) I am trying to complete a multiple comparison test after completing a one-way ANOVA on some data. I think this is pretty reasonable. aov(MetricSubset ~ GeneNameFactor) works pairwise.t.test(MetricSubset,GeneNameSubset,p.adjuxt.method=bonferroni,p ool.sd=FALSE)

...m.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a config.status: creating src/unix/Makefile make: /usr/local/R-devel/srcunix: No such file or directory *** Error code 2 Stop in /usr/local/R-devel/src/unix. *** Error code 1 Stop in /usr/local/R-devel/src. *** Error code 1 Stop in /usr/lo...

...conf.level, length(means), x$df.residual) * sqrt((MSE/2) * outer(1/n, 1/n, "+"))[keep] - dnames <- list(NULL, c("diff", "lwr", "upr")) + est <- center/(sqrt((MSE/2) * outer(1/n, 1/n, "+"))[keep]) + pvals <- ptukey(abs(est),length(means),x$df.residual,lower.tail=FALSE) + dnames <- list(NULL, c("diff", "lwr", "upr","p adj")) if (!is.null(nms)) dnames[[1]] <- outer(nms, nms, paste, sep = "-")[keep] - out[[nm]] <- array(c(center, c...

...running nice (Tukey and SNK), for simple design (completely randomized, randomized block and Latin squares) and simple experimental schemes (one factor). I'm needing only two informations: 'qduncan' and 'pduncan', similar to already available in R 'qtukey' and 'ptukey'. The basic algorithm implemented with SNK test will be used for Duncan test. Below a sample: a) Generating data and calling the function: tra = gl(4, 5, label = c('A', 'B', 'C', 'D')) blo = rep(1:5, 4) pro = c(NA, 26, 20, 23, 21, 31, 25, 28, 27, 24, 22, 26,...

Hi, All: ** My previous email on this subject seemed to contain an error; check the correction: Is there a function in R to compute the expected range of a sample of size n from some distribution? I ask, because I was recently asked about the control chart constant 'd2', which is the expected range for a sample of size n from a standard normal. There is a fairly simple

...-ieee_with_inexact -g -I../include -I../../src/include -c pnbeta.c -o pnbeta.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c pnf.c -o pnf.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c pnt.c -o pnt.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c ptukey.c -o ptukey.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c qtukey.c -o qtukey.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c dwilcox.c -o dwilcox.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c pwilcox.c -o pwilcox.o gcc -ieee_with_inexact -g...

...rc/include -c qnchisq.c cc -ieee_with_inexact -g -I../../src/include -c dnbeta.c cc -ieee_with_inexact -g -I../../src/include -c pnbeta.c cc -ieee_with_inexact -g -I../../src/include -c pnf.c cc -ieee_with_inexact -g -I../../src/include -c pnt.c cc -ieee_with_inexact -g -I../../src/include -c ptukey.c cc -ieee_with_inexact -g -I../../src/include -c qtukey.c cc -ieee_with_inexact -g -I../../src/include -c dwilcox.c cc -ieee_with_inexact -g -I../../src/include -c pwilcox.c cc -ieee_with_inexact -g -I../../src/include -c qwilcox.c cc -ieee_with_inexact -g -I../../src/include -c rwilcox.c ar...

...th_inexact -g -I../include -I../../src/include -c pnbeta.c -= o = pnbeta.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c pnf.c -o p= nf.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c pnt.c -o p= nt.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c ptukey.c -= o = ptukey.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c qtukey.c -= o = qtukey.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c dwilcox.c = -o = dwilcox.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c pwilcox.c = -o = pwilcox.o gcc -ieee...

Well, it is clear enough that the problem is in interpreting the documentation. However, when you claim you tested something, and found it inconsistent with tables, it would be advisable to back it up with examples! The description in the help files and in the sources is admittedly confusing. The original paper has this, rather more clear, description in the abstract: "We consider the

...I../include -I../../src/include -c dnbeta.c -o dnbeta.o gcc -g -O2 -I../include -I../../src/include -c pnbeta.c -o pnbeta.o gcc -g -O2 -I../include -I../../src/include -c pnf.c -o pnf.o gcc -g -O2 -I../include -I../../src/include -c pnt.c -o pnt.o gcc -g -O2 -I../include -I../../src/include -c ptukey.c -o ptukey.o gcc -g -O2 -I../include -I../../src/include -c qtukey.c -o qtukey.o gcc -g -O2 -I../include -I../../src/include -c dwilcox.c -o dwilcox.o gcc -g -O2 -I../include -I../../src/include -c pwilcox.c -o pwilcox.o gcc -g -O2 -I../include -I../../src/include -c qwilcox.c -o qwilcox.o gcc...

...I../include -I../../src/include -c dnbeta.c -o dnbeta.o gcc -g -O2 -I../include -I../../src/include -c pnbeta.c -o pnbeta.o gcc -g -O2 -I../include -I../../src/include -c pnf.c -o pnf.o gcc -g -O2 -I../include -I../../src/include -c pnt.c -o pnt.o gcc -g -O2 -I../include -I../../src/include -c ptukey.c -o ptukey.o gcc -g -O2 -I../include -I../../src/include -c qtukey.c -o qtukey.o gcc -g -O2 -I../include -I../../src/include -c dwilcox.c -o dwilcox.o gcc -g -O2 -I../include -I../../src/include -c pwilcox.c -o pwilcox.o gcc -g -O2 -I../include -I../../src/include -c qwilcox.c -o qwilcox.o gcc...

...aking plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making wilcox.d from wilcox.c making signrank.d from signrank.c gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -c mlutils.c -o mlutils.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -c d1mach.c -...

...geom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o* *ranlib libnmath.a* *make[4]: Leaving directory `/data/mbp15ja/R-3.4.1/R-3.4.1/src/nmath'* *make[3]: *** No rule to make target `../extra/tre/libtre.a', needed by `libR.so'. Stop.* *make[3]: Leaving directory `/data/mbp15ja/R-3.4.1/R-3.4.1/src/...

...aking plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making wilcox.d from wilcox.c making signrank.d from signrank.c gmake[3]: Leaving directory `/home/netlj/Software/R-1.3.0/src/nmath' gmake[3]: Entering directory `/home/netlj/Software/R-1.3.0/src/nmath' cc -I. -I../../src/include -I../../src/inc...

Please note that building R on Windows is documented in "R Installation and Administration", including links to external software. Particularly there is a link to texinfo which is part of Rtools. The documentation is maintained and it is a sufficient source of information for building R on Windows. https://cran.r-project.org/doc/manuals/r-release/R-admin.html

...aking plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making wilcox.d from wilcox.c making signrank.d from signrank.c make[3]: Leaving directory `/home/mfa5/gilp/R-versions/R-devel/src/nmath' make[3]: Entering directory `/home/mfa5/gilp/R-versions/R-devel/src/nmath' gcc -I. -I../../src/include -I.....