search for: protein_id

...ppose to look like that: I have: FBpp0070086;FBpp0099643;FBpp0112915 I would like to have: "FBpp0070086","FBpp0099643","FBpp0112915" I tried with various numbers of backslashes, but noe have worked. for example: gsub(";", "\\\",\"", data$protein_ids) gsub(";", "\\",\"", data$protein_ids) gsub(";", "\",\"", data$protein_ids) gsub(";", "\\',\\'", data$protein_ids) gsub(";", '"',data$protein_ids) What do I miss? Thanks Assa [[altern...

...l/Temp/Rtmp4QanHv/SRMService.Rcheck/SRMService/doc/tr_srm_summary.R:2:22: unexpected '<' 1: params <- 2: list(configuration = < This is how the start of the .R file produced from the vignette looks like. params <- list(configuration = <environment>, data = structure(list(protein_Id = c("CiRT standards", I am worried that this is the end of this road with parameterized vignettes then? What do you think? regards Witek On 2 July 2018 at 18:21, Duncan Murdoch <murdoch.duncan at gmail.com> wrote: > On 02/07/2018 11:22 AM, Witold E Wolski wrote: >> &...

...gt; unexpected '<' >> 1: params <- >> 2: list(configuration = < >> >> This is how the start of the .R file produced from the vignette looks >> like. >> >> params <- >> list(configuration = <environment>, data = structure(list(protein_Id = >> c("CiRT standards", >> >> I am worried that this is the end of this road with parameterized >> vignettes then? What do you think? > > > Interesting. The issue is that the value being assigned to configuration is > an environment, and whatever code...

...ervice/doc/tr_srm_summary.R:2:22: > unexpected '<' > 1: params <- > 2: list(configuration = < > > This is how the start of the .R file produced from the vignette looks like. > > params <- > list(configuration = <environment>, data = structure(list(protein_Id = > c("CiRT standards", > > I am worried that this is the end of this road with parameterized > vignettes then? What do you think? Interesting. The issue is that the value being assigned to configuration is an environment, and whatever code produces those lines in tr_srm_...

...t;>> 1: params <- >>> 2: list(configuration = < >>> >>> This is how the start of the .R file produced from the vignette looks >>> like. >>> >>> params <- >>> list(configuration = <environment>, data = structure(list(protein_Id = >>> c("CiRT standards", >>> >>> I am worried that this is the end of this road with parameterized >>> vignettes then? What do you think? >> >> >> Interesting. The issue is that the value being assigned to configuration is >> a...

Hello, Thank you for the questions as well as remaining me of the default parameters in the yaml session. Indeed this seems to be the solution. But how would I assign package data as a default parameter? So originally I thought to render the markdown with : <code> data(sample_analysis) data(skylineconfig) x <- rmarkdown::render("report.Rmd", output_format =