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2005 Apr 18
2
Very Slow Gower Similarity Function
...##calculate index vector of non-NA descriptors between objects i and j descvect <- intersect (setdiff (DESCRIPT, DESCRIPT[is.na(mat[i,DESCRIPT])]), setdiff (DESCRIPT, DESCRIPT[is.na (mat[j,DESCRIPT])])) descnum <- length(descvect) # number of valid descr for i~j comparison partialsim <- (1- abs(mat[i,descvect]-mat[j,descvect])/MRANGE[descvect]) smat[i,j] <- smat[j,i] <- sum (partialsim) / descnum } } smat } Thank-you for your time, Tyler -- Tyler Smith PhD Candidate Plant Science Department McGill University tyler.smith at mail.mcgill.ca