Displaying 1 result from an estimated 1 matches for "newcountdataset".
2011 Nov 07
1
DESeq
...elimited .txt) appears to be correct:
>head(myfile)
VZ_w13 VZ_w14a VZ_w14b VZ_w15a VZ_w15b VZ_w16a
ENSG00000253101 0 0 0 0 0 0
ENSG00000223972 0 0 0 0 0 0...
However, when I try to analyze the data with
>cds <- newCountDataSet(myfile,conds)
I get the following message:
"Error in newCountDataSet(myfile,conds) : The countData is not integer.
The problem, as far as I can tell, is that my data are numerical, not integer, because when I run
>str(myfile)
'data.frame': 53433 obs. of 14 variables:
$ VZ_w1...