Displaying 11 results from an estimated 11 matches for "netcdf_libdir".
2006 Apr 25
0
need automake/autoconf help to build RnetCDF and ncdf packages
...cumented in R. If you have installed the netcdf include and library
directories in some non-standard location, you can specify BOTH these
during the R CMD INSTALL process using the following syntax:
R CMD INSTALL
--configure-args="-with-netcdf_incdir=/path/to/netcdf/incdir
-with-netcdf_libdir=/path/to/netcdf/libdir" ncdf_1.1.tar.gz
where you should, of course, specify your own netcdf include and library
directories, and the actual package name.
***************************************************************************
I found that the following did work!
# R CMD INS...
2008 Mar 13
0
need automake/autoconf help to build RnetCDF and ncdf packages
...be
well documented in R. If you have installed the netcdf include and library
directories in some non-standard location, you can specify BOTH these
during the R CMD INSTALL process using the following syntax:
R CMD INSTALL
--configure-args="-with-netcdf_incdir=/path/to/netcdf/incdir
-with-netcdf_libdir=/path/to/netcdf/libdir" ncdf_1.1.tar.gz
where you should, of course, specify your own netcdf include and library
directories, and the actual package name.
***************************************************************************
I found that the following did work!
# R CMD INSTALL
--c...
2003 Dec 11
1
bug + insufficient doc in R CMD INSTALL (PR#5703)
...no error message is generated, but
the first specification is silently overwritten by the second
specification. The process therefore fails.
So for instance, a user contacted me after typing this:
R CMD INSTALL
--configure-args=-with-netcdf_incdir=/usr/local/netcdf/include
--configure-args=-with-netcdf_libdir=/usr/local/netcdf/lib ncdf_1.1.tar.gz
and it failed (they contacted me because I'm the maintainer of the ncdf
package).
I would say that this is both a bug and something that needs more
documentation. It's a bug because it accepts the incorrect line without
giving an error message, but d...
2010 Mar 16
2
Problem in installing ncdf package
...LL ncdf_1.6.tar.gz # fail
sudo R CMD INSTALL ncdf_1.6.tar.gz # fail
cd /home/user/soft/
# download http://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-4.0.1.tar.gz
tar -xzvf netcdf-4.0.1.tar.gz
R CMD INSTALL --configure-args="-with-netcdf_incdir=/home/user/soft/netcdf-4.0.1/libsrc -with-netcdf_libdir=/home/user/soft/netcdf-4.0.1/libsrc/" ncdf_1.6.tar.gz # Error: user specified netCDF library directory does not have libnetcdf.a !
Thank you very much for your kind help.
[[alternative HTML version deleted]]
2008 Dec 23
1
NetCDF within R: installation assistance
...on instructions found at
"http://www.image.ucar.edu/Software/Netcdf/", but not successfully. I'm
wondering if you can give some advice that will change our outcome?
We've run "R CMD INSTALL
--configure-args="-with-netcdf_incdir=/usr/local/netcdf-3.6.1/include
-with-netcdf_libdir=/usr/local/netcdf-3.6.1/lib" ncdf_1.6.tar.gz"
against NetCDF 3.6.1, 3.6.2, and 4.0 all with the same results.
I think our being on a 64-bit Linux has to do with the failure. Can you
confirm this?
Outputs are below from the 64-bit system "halfmoon":
[root at halfmoon local]#...
2009 Apr 21
1
joined R-today
Friends,
I am a newbie to R. Just installed and started with R. I installed netcdf
library (netcdf-4.0.tar.gz) and then ncdf package of R from CRAN with the
following command.
R CMD INSTALL
--configure-args="-with-netcdf_incdir=/usr/local/netcdf/include
-with-netcdf_libdir=/usr/local/netcdf/lib" ncdf_1.6.tar.gz
The installation was successful. But when i try to use ncdf inside R, i get
the following error. Kindly help me how to resolve the problem.
> trjfile<-system.file('test.netcdf',package='bio3d')
> trj<-read.ncdf(trjfile)
Loadi...
2010 Mar 09
1
ncdf installation
Friends,
I tried to install ncdf package in ubuntu with the following command.
R CMD INSTALL
--configure-args="-with-netcdf_incdir=/apps/netcdf/4.0.1/gcc/include
-with-netcdf_libdir=/apps/netcdf/4.0.1/gcc/lib" ncdf_1.6.tar.gz
The installation was stopped throwing the following error. I tried to google
it but didnt find any solution. someone kindly write me what is going wrong.
** libs
gcc -std=gnu99 -I/usr/share/R/include -I/apps/netcdf/4.0.1/gcc/include
-fpic -g -O2 -...
2004 Mar 13
1
Installing ncdf package
...cumented in R. If you have installed the netcdf include and
library
directories in some non-standard location, you can specify BOTH
these
during the R CMD INSTALL process using the following syntax:
R CMD INSTALL
--configure-args="-with-netcdf_incdir=/path/to/netcdf/incdir
-with-netcdf_libdir=/path/to/netcdf/libdir" ncdf_1.1.tar.gz
where you should, of course, specify your own netcdf include and
library
directories, and the actual package name.
***************************************************************************
ERROR: configuration failed for package 'ncdf&...
2013 Mar 07
1
install error - Netcdf library (linux)
...#39;m tying to install the netcdf intraface, i tried both ncdf and ncdf4
but trying to build i received the error :
(i have necdf installed on my machine and it is able to fiund it .. no missed .h)
epy at epinux:~$ sudo R CMD INSTALL --configure-args="-with-netcdf_incdir=/usr/include -with-netcdf_libdir=/usr/lib" ncdf4_1.8.tar.gz
* installing to library ?/usr/local/lib/R/site-library?
* installing *source* package ?ncdf4? ...
checking for nc-config... yes
Using nc-config: nc-config
Output of nc-config --all:
This netCDF 4.2.1.1 has been built with the following features:
--cc ->...
2010 Oct 09
1
ncdf installation in R
...o install ncdf package on a Linux 64-bit machine.
I successfully installed netcdf using this command,
./configure --prefix=/home/challar/netcdf/ --disable-netcdf4
I then tried to install ncdf package in R
R CMD INSTALL --configure-args="-with-netcdf_incdir=/home/challar/netcdf/include -with-netcdf_libdir=/home/challar/netcdf/lib" ncdf_1.6.3.tar.gz
I get this output below
* installing to library â/home/challar/R/R-2.11.1/libraryâ
* installing *source* package âncdfâ ...
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler...
2013 Mar 07
0
install Netcdf library (linux)
...#39;m tying to install the netcdf intraface, i tried both ncdf and ncdf4
but trying to build i received the error :
(i have necdf installed on my machine and it is able to fiund it .. no missed .h)
epy at epinux:~$ sudo R CMD INSTALL --configure-args="-with-netcdf_incdir=/usr/include -with-netcdf_libdir=/usr/lib" ncdf4_1.8.tar.gz
* installing to library ?/usr/local/lib/R/site-library?
* installing *source* package ?ncdf4? ...
checking for nc-config... yes
Using nc-config: nc-config
Output of nc-config --all:
This netCDF 4.2.1.1 has been built with the following features:
--cc -&g...