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2008 Apr 18
2
rzinb (VGAM) and dnbinom in optim
...to pass it 'mu'. I've tried a wrapper function but it still hangs. An example: #set up dummy data,load VGAM, which is where I am getting the zero-inflated neg binom #I get the same problem without VGAM, using dnbinom in the wrapper instead. library(VGAM) phi <- 0.09 size <- 0.7 munb <- 72 x <- rzinb(200, phi=phi, size=size, munb=munb) #VGAM can fit using vglm... but I'd like to try optim > fit <- vglm(x~1, zinegbinomial,trace=TRUE) VGLM linear loop 1 : loglikelihood = -964.1915 VGLM linear loop 2 : loglikelihood = -964.1392 VGLM linear loop 3 :...