search for: mcsisrkmaaefi

I have a protein sequence alignement and for each position of the alignement, I want to plot two values (one per sequence). Alignements look like this: MVAFKGVWTQAFWKAVTAEFL --------MCSISRKMAAEFI So, data for the plot would be something like this Prot 1 values: 1 5 2 7 4 3 5 6 8 2 2 7 6 4 2 8 5 8 2 3 7 3 Prot 2 values: 1 8 5 0 5 3 4 1 2 2 3 7 0 Aligned Prot 1 seq: M V A F K G V W T Q A F W K A T V T A E F L Aligned Prot 2 seq: - - - - - - - - M C...