Displaying 1 result from an estimated 1 matches for "macro_mono_targets".
2006 Dec 17
2
question
...the bad spot are not associated to the
same probes
2) how can I remove control probes from my data ?
I'm sorry, i'm new with R and I can't find answer in packages doc.
best regards,
Claire Pujoll
Paris, France
library(marray)
library(limma)
.......
Rawdata <- read.GenePix(targets=Macro_Mono_targets,skip=107)
design<- cbind(individual=c(0,0,1,1,2,2,3,3,4,4,5,5),
dim1=c(1,0,1,0,1,0,1,0,1,0,1,0),dim2=c(0,1,0,1,0,1,0,1,0,1,0,1))
fit <- lmFit(normdata@maM, design)
contrast.matrix<-makeContrasts(dim1vsdim2=dim2-dim1, levels=design)
fit2 <- contrasts.fit(fit,contrast.matrix)
fiteb <...