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I always followed http://cran.r-project.org/bin/linux/ubuntu/ to install R on Ubuntu 8.1. I had no errors before! > install.packages("XML") Warning in install.packages("XML") : argument 'lib' is missing: using '/usr/local/lib/R/site-library' --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL

...iblam ... checking for main in -llam... no liblam not found. Probably not LAM-MPI checking for openpty in -lutil... no checking for main in -lpthread... no configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include -DPACKAGE_NAME =\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -D PACKAGE_BUGREPORT=\"\" -I/usr/local/mpich-1.2.7p1/include -DMPI2 -I/usr/loc al/include -fpic -g -O2 -std=gnu99 -c conversion.c -o conversion.o gcc -I/usr/local/lib64/R...

...-gcc/include Trying to find libmpi.so or libmpich.a ... Found libmpi in /usr/lib64/openmpi/1.2.7-gcc/lib checking for openpty in -lutil... yes checking for main in -lpthread... yes configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -m64 -std=gnu99 -I/usr/include/R -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -I/usr/lib64/openmpi/1.2.7-gcc/include -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack...

...in /usr/include Trying to find libmpi.so or libmpich.a ... Found libmpi in /usr/lib checking for openpty in -lutil... yes checking for main in -lpthread... yes configure: creating ./config.status config.status: creating src/Makevars ** libs x86_64-pc-linux-gnu-gcc -std=gnu99 -I/usr/lib64/R/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -I/usr/include -DMPI2 -DOPENMPI -I/usr/local/include -fpic -march=nocona -O2 -pipe -fomit-frame-pointer -c RegQuery.c -o RegQuery.o x86_64-pc-lin...

...-gcc/include Trying to find libmpi.so or libmpich.a ... Found libmpi in /usr/lib64/openmpi/1.2.7-gcc/lib checking for openpty in -lutil... yes checking for main in -lpthread... yes configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -m64 -std=gnu99 -I/usr/include/R -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -I/usr/lib64/openmpi/1.2.7-gcc/include -DMPI2 -DOPENMPI -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack...

...o ... checking for main in -llam... yes checking for openpty in -lutil... yes checking for main in -lpthread... yes configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -std=gnu99 -I/usr/local/pkg/r/r-2.6.1/lib64/R/include -I/usr/local/pkg/r/r-2.6.1/lib64/R/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -I/import/home/u1/uaf/ogorman/lam/include -DMPI2 -DLAM -fPIC -I/usr/local/include -fpic -g -O2 -c conversion.c -o conversion.o gcc -std=gnu99...

..... Found in /usr/local/include Try to find libmpi.so or libmpich.a Found libmpi in /usr/local/lib checking for openpty in -lutil... yes checking for main in -lpthread... yes configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -std=gnu99 -I/usr/local/lib64/R/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -I/usr/local/include -DMPI2 -DOPENMPI -fPIC -I/usr/local/include -fpic -g -O2 -c conversion.c -o conversion.o gcc -std=gnu99 -I/usr/local/lib64/R/...

...n /usr/local/include Trying to find libmpi.so or libmpich.a ... Found libmpi in /usr/local/lib checking for openpty in -lutil... yes checking for main in -lpthread... yes configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -I/usr/local/include -DMPI2 -DOPENMPI -fpic -O3 -pipe -g -c RegQuery.c -o RegQuery.o gcc -std=gnu99 -I/usr/share/R...

...ing to library ?/auto/usc/R/2.13.0/lib64/R/library? * installing *source* package ?Rmpi? ... checking for openpty in -lutil... no checking for main in -lpthread... no configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -std=gnu99 -I/usr/usc/R/2.13.0/lib64/R/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -I/usr/usc/mpich/default/default/include -DMPICH -I/usr/local/include -fpic -g -O2 -c RegQuery.c -o RegQuery.o gcc -std=gnu99 -I/usr/usc/R/2.13....

.../usr/local//include Trying to find libmpi.so or libmpich.a ... Found libmpi in /usr/local//lib checking for openpty in -lutil... yes checking for main in -lpthread... yes configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -I/usr/local//include -DMPI2 -DOPENMPI -fpic -O3 -pipe -g -c RegQuery.c -o RegQuery.o gcc -std=gnu99 -I/usr/share...

...find liblam ... checking for main in -llam... yes checking for openpty in -lutil... yes checking for main in -lpthread... yes configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -I/gcm/home/a347549/local64/lib64/R/include -I/gcm/home/a347549/local64/lib64/R/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -I/gcm/home/a347549/local64/include -DMPI2 -I/usr/local/include -fpic -g -O2 -std=gnu99 -c RegQuery.c -o RegQuery.o gcc -I/gcm/home/a347549/local...

...Found libmpi in /usr/lib/lam/lib Try to find liblam.so ... Found liblam in /usr/lib/lam/lib checking for openpty in -lutil... yes checking for main in -lpthread... yes configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -std=gnu99 -I/home/bs/R_home/R-2.11.1/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -I/usr/lib/lam/include -DMPI2 -DLAM -I/usr/local/include -fpic -g -O2 -c RegQuery.c -o RegQuery.o gcc -std=gnu99 -I/home/bs/R_home/R-2.11.1/inclu...

.../usr/local/lam-mpi/lib Try to find liblam ... Found liblam in /usr/local/lam-mpi/lib checking for openpty in -lutil... no checking for main in -lpthread... no configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -I/usr/local/lib/R/include -I/usr/local/lib/R/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -I/usr/local/lam-mpi/include -DMPI2 -I/usr/local/include -fpic -g -O2 -std=gnu99 -c RegQuery.c -o RegQuery.o gcc -I/usr/local/lib/R/include -I/usr...

Updating the fink flac to 1.0.4, it won't compile because finds the headers of the previous version in /sw/include, because the CPPFLAGS/CFLAGS are being put before the local includes: (configure with ./configure --prefix=/sw --mandir=/sw/share/man ) gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"flac\" -DVERSION=\"1.0.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRIN...

...faculty/hodgess/lib Try to find liblam ... Found liblam in /home/faculty/hodgess/lib checking for main in -lpthread... yes configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -std=gnu99 -I/home/faculty/hodgess/R-2.6.0/include -I/home/faculty/hodgess/R-2.6.0/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -I/home/faculty/hodgess/include -DMPI2 -fPIC -I/usr/local/include -fpic -g -O2 -c conversion.c -o conversion.o gcc -std=gnu99 -I/home/faculty/hodg...

...gt; config.status: executing depfiles commands > Type "make; make install" to compile and install Speex > ESTIMATED COMPILE TIME: 0:19.70. > Making all in libspeex > make[1]: Entering directory `/home/war/speex-1.1.4/libspeex' > if /bin/sh ../libtool --mode=compile gcc -DPACKAGE_NAME=\"\" > -DPACKAGE_TARNAME=\ > "\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" > -DSTDC > _HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 > -DHAVE_STR > ING_H=1 -DHAVE_MEMORY_H=1 -DHAV...

...directory `/home/robin/flac-1.0.4/src/libFLAC++' source='file_decoder.cc' object='file_decoder.lo' libtool=yes \ depfile='.deps/file_decoder.Plo' tmpdepfile='.deps/file_decoder.TPlo' \ depmode=none /bin/sh ../../depcomp \ /bin/sh ../../libtool --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT =\"\" -DPACKAGE=\"flac\" -DVERSION=\"1.0.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_...

Dear R Gurus: Is there a problem with Rmpi on x86 with SUSE 10.1, please? I've tried everything and it still won't load. Has anyone else dealt with this please? Thanks, Edna Bell

...d liblam ... checking for main in -llam... no liblam not found. Probably not LAM-MPI checking for openpty in -lutil... yes checking for main in -lpthread... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/zzz.R ** libs gcc -I/usr/lib/R/include -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES...

...> Updating the fink flac to 1.0.4, it won't compile because finds the > headers of the previous version in /sw/include, because the > CPPFLAGS/CFLAGS are being put before the local includes: > > (configure with ./configure --prefix=/sw --mandir=/sw/share/man ) > > gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" > > -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"flac\" > -DVERSION=\"1.0.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 > -DHAVE_SYS_STAT_H=1 -DHAVE_STD...