Displaying 4 results from an estimated 4 matches for "cyanobacteria".
2013 Sep 18
1
ggplot2: changing strip text in facet_grid and a legend text problem
...raph. I want however, the text horizontally on the right side.
I do not understand why facet_grid plotted it this way for me. Why?
I would also like to change the text in the legend of this plot.
I have tried several solutions including:
scale_fill_discrete(guide = guide_legend(), labels=c("cyanobacteria", "zooplankton"))
scale_fill_discrete(name="organism",
breaks=c("cyano", "seston"),
labels=c("cyanobacteria", "seston"))
for some reason nothing works. Ideas?
mydata <- data.frame(...
2012 Mar 02
2
Why do my regular expressions require a double escape \\ to get a literal??
...use regular expressions to
sort out some data in R.
I'm working on a data file which contains taxonomical data of bacteria
in hierarchical order.
A sample of this file can be generated using:
tax.data <- read.table(header=F, con <- textConnection('
G9SS7BA01D15EC Bacteria(100) Cyanobacteria(84) unclassified
G9SS7BA01C9UIR Bacteria(100) Proteobacteria(94)
Alphaproteobacteria(89)
G9SS7BA01CM00D Bacteria(100) Proteobacteria(99)
Alphaproteobacteria(99)
'))
close(con)
What I try to do is to remove the parenthesis and the number inside
(which could contain a dec...
2010 Oct 28
1
Heatmap construction problems
...Phylum,AI,AJT,BY,GA,Grt,Sm
Acidobacteria,0.5,0.7,2.7,0.1,2.6,1.0
Actinobacteria,33.7,65.1,9.7,2.0,3.9,2.1
Bacteroidetes,9.7,5.6,0.7,13.2,41.1,21.6
CCM11b,0.0,0.0,0.0,0.0,0.0,0.1
Chlamydiae,0.1,0.1,0.0,0.0,1.0,0.2
Chlorobi,0.0,0.0,0.0,0.0,0.7,1.0
Chloroflexi,0.1,0.2,0.6,0.2,0.8,0.6
Cyanobacteria,18.7,0.0,1.0,1.5,0.9,0.3
Ellusimicrobiales,0.0,0.0,0.0,0.0,0.0,0.0
Firmicutes,1.0,7.6,8.3,31.9,2.1,6.9
Gemmatimonadetes,5.0,0.3,0.3,0.0,0.1,0.0
GN02,0.0,0.0,0.0,0.0,0.0,0.5
Nitrospirae,0.0,0.2,1.1,0.0,0.0,0.0
NKB19,0.0,0.0,0.9,0.0,0.0,0.0
OP8,0.0,0.1,0.0,0.0,0.0,0.0
OP10,0.6,0.2,0.5,0.0,0.6...
2013 Mar 19
1
write random sampling as table output
...timonadetes Lentisphaerae GN02 Armatimonadetes Tenericutes Spirochaetes Epsilonproteobacteria TM6 Acidobacteria Chlorobi Firmicutes Nitrospirae Chloroflexi Verrucomicrobia Alphaproteobacteria Betaproteobacteria Deltaproteobacteria Gammaproteobacteria uncl.Proteobacteria Actinobacteria Bacteroidetes Cyanobacteria Planctomycetes unclassified
Gi10Sep12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.002583979 0 0.004306632 0 0 0 0 0 0.001722653 0.000861326 0.004306632 0.006890612 0 0 0.003445306 0.005167959 0.192075797 0.074074074 0.011197244 0.029285099 0.01205857 0.312661499 0.103359173 0.124892334...