Displaying 2 results from an estimated 2 matches for "cuffdiff".
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cfgdiff
2012 Apr 17
1
Cummerbund differential expression data analysis package issue
Hi all,
I'm having the same issue as in this previous post:
http://r.789695.n4.nabble.com/R-error-td4200447.html#a4209042
And as another user of Biostar:
http://www.biostars.org/post/show/42562/cummerbund-isnt-managing-cuffdiff-database/#42895
Whereby I'm trying to output cuffdiff data into cummeRbund, but it appears
to be having issues with connection to a database (below). Does anyone have
any suggestions as to how I can fix this? Thanks!
cuff_data <-
readCufflinks('/home/sbica1/tophat/finaltrans/tophat...
2011 Nov 09
3
R to automate scatter plots
...al look at it..
here is the script I have been using
# source of this code below
#http://cran.r-project.org/doc/contrib/Lemon-kickstart/kr_scrpt.html
# store the current directory
initial.dir<-getwd()
# change to the new directory
setwd("/data/homes/ccpage/ngs/Argueso/Tophat/flocculated/cuffdiff/
fpkmgt")
# source of this code below
# https://stat.ethz.ch/pipermail/r-help/2008-March/158336.html
files <- Sys.glob("*.csv") # get names of files to process
#result <- numeric(length(files)) # preallocate assuming single value
from each file
for (i in seq_along(file...