search for: corals

Hi All, I'm using the following code to produce some stacked bar graphs. *setwd("C:\\Users\\Tinus\\Documents\\NMMU\\R\\Seamounts")* *SChla <- read.csv("SM_Chla_data.csv")* * * *#Extract mean values from data file* * * *Coral <- SChla[185:223,] #Reduce SChla to Coral only* *coral <- with(Coral , aggregate(cbind(Pico, Nano, Micro), list(Depth),FUN=mean))*

I'm trying out a basic plot, but something about the way I subset my data leads to problems with the plot. Here is the first bit of my data set year,date,location,quadrat_juvenile,photo_location,photo_exists,genus,count,divers 2005,2005-04-30, 1 Fringing Reef,1, 1 Fringing Reef Coral Transect Pole 1-2 Quadrat 1,t,Acanthastrea,0,HP+MEM 2005,2005-04-30, 1 Fringing Reef,1, 1 Fringing Reef

I'd greatly appreciate your help in making a bar graph with multiple variables plotted on it. All the help sites I've seen so far only plot 1 variable on the y-axis Data set: I have 6 sites, each measured 5 times over the past year. During each sampling time, I counted the occurrences of different benthic components (coral, dead coral, sand, etc.) over 5 transects in each site site

Hi! Coral isn''t working from Xen. If you can please try it, maybe i''m just doing something wrong. However it works from outside Xen with the same setup. Can Xen cause this kind of DNS errors? Try something like: http://www.scs.cs.nyu.edu.nyud.net:8090/coral/ or http://www.google.com.nyud.net:8090/ -- /Varga Péter/ ------------------------------------------------------- The

How can I print a data.frame to a PDF with pdf()...dev.off() ____________ Paulo E. Cardoso [[alternative HTML version deleted]]

Hello comunity, I'm trying to find a similar function as decile of SPSS, NTILES (10) some of you know about that, I will appreciate your help in advance. In SPSS VARIABLES=Sales (A) /NTILES (10) /PRINT=NO for example if I have Next data input: case IdCust Sales Profit 1 265 140.81 314.31 2 266 1778.96 408.32 3 267 2663.66 820.85 4 268 2994.14 913.73 5 269 2185.58 686.64 6 271 105.21

Hi R-Users, I have a student doing work with lionfish and she has been trying to analyse a multivariate dataset to see what variables/factors are influencing the behaviour of lionfish. We have attempted a number of analyses, including rpart, relimpo and standard linear regression but we are not having much luck with quality output. The data is very non-normal and we would appreciate some advice

Can any one give me an explanation on whats going on in this exercise. And any advice on how i should go about it. I dont need any exact codes just yet. But at least a good idea on how to start will be good Thanks Exercise 2: Gunfight at the OK Corral Description Overview This exercise is to create a small ruby program to determine the winners of gunfights, as seen in old Western movies.

Over the last several day, we''ve been getting pretty regular scans from a non-existant host on our port 7. Any idea what they are looking for/what are some of vulnerabilites with echo? Thanks Coral Cook

Hi all, I am wondering if anyone has written (or knows of) a function that will conduct a goodness-of-fit test for a gamma distribution. I am especially interested in test statistics have some asymptotic parametric distribution that is independent of sample size or values of fitted parameters (e.g., a chi-squared distribution with some fixed df), because I want to fit gamma distributions to

Hello! I'm a PhD student working with coral reef fish diversity in Mexico. I want to do species accumulation curves but I have differential sampling effort for each "sample". Do you know or have developed an R script that consider the differential effort of each sample? PRIMER and other programs use each pack of species as a replica without the possibility of telling the program that

hi, I am trying to start a new domainU but got the error: Error: Device 0 (vif) could not be connected. Hotplug scripts not working I have struggled with it for a long time. I found somebody else report this but can not find a solution. The xen version is xen-3.0 latest version. I do not have a initrd. Domain0 works fine but when I create a new domain, it always gives an error as above. Thanks,

Hi there, I have been having trouble running negative binomial regression (glm.nb) using library MASS in R v2.15.0 on Mac OSX. I am running multiple models on the variables influencing the group size of damselfish in coral reefs (count data). For total group size and two of my species, glm.nb is working great to deal with overdispersion in my count data. For two of my species, I am getting a

I used the following to assign each row the group average, where w is the new group average variable, x is the variabale to be averaged, and g is the nominal group indicator: w <- ave(x,g) Now I want to calculate the group average, but WITHOUT each row's value of x. Is there an easy way to do this? I'm sure I'm missing something obvious here, but for the life of me I can't

I need advice on how to create a variable that is the group mean of another variable. For example, I have a variable called x for which each row in the data set has a value. I also have a nominal variable called g that indicates which of 100 different groups each row belongs to. So, I want to create a new variable called w, which is the group mean of x for which ever group the row belongs to (as

I'm sure this is easy, but I'm having a hard time figuring out how to recode some data in R. I have a variable "numpeers" which is valued 1, 2, or 3. I also have three other variables called "w9zd9_1," "w9zd9_2," and "w9zd9_3." I want to use these variables to create a new item called "distot." Specifically, here is what I want to do:

All, I've coded a function and it works manually if I copy it line by line into R. However, when I try to "load" (copy and paste) the entire function into R, I get the following error after the listed line of code: + N.j.list = lapply(rej.hyp, length) Error: symbol print-name too long Does anyone you know what this error means? Strangely, when I copy the same line verbatim

I have a really long functions, and at the end of the function, I am using a if statement to tag certain keywords based on whether they have certain values contained in them. However, the if statement doesn't seem to work. When I had split up the commands into various functions, it worked fine, but I'm not sure what going on now that it's combined into a single function. myfunc

Dear R list, I have a sequence of weekly observations of number of adults and larvae in various size classes from a butterfly population living in a subtropical area with pronounced wet and dry seasons. Wet and dry seasons are each defined 26 weeks long with fixed start and end dates. The data span 103 weeks (two seasons each of wet and dry) with some missing weeks. What I would like to do is

Dear David, you asked this question a while ago on the R mailing list and got no answer. I have the same problem and was wondering if you had found a solution Cheers Loic Loic Thibaut, PhD candidate, ARC Centre of Excellence for Coral Reef Studies, School of Marine Biology, James Cook University, Townsville, Qld, 4811, Australia. Tel + 61 747 815 735, Fax: + 61 747 251 570, email: