Displaying 4 results from an estimated 4 matches for "chr6".
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chr
2007 Oct 09
1
read only certain parts of a file
...88 000019_0070 Chr1 4 108 85826948 85826844 C 105 95.24
===================================================
Matches For Query 1 (124 bases): 000024_1262
===================================================
Score Q_Name S_Name Q_Start Q_End S_Start S_End Direction Bases identity
99 000024_1262 Chr6 16 124 35738256 35738364 F 109 100.00
I would like to have a data frame that has only:
Score Q_Name S_Name Q_Start Q_End S_Start S_End Direction Bases identity
89 000019_0070 Chr15 3 108 43251883 43251778 C 106 95.28
88 000019_0070 Chr1 4 108 85826948 85826844 C 105 95.24
99 000024_1262...
2012 Sep 15
2
qplot: plotting precipitation data
...), .Label =
c("chr1",
"chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16",
"chr17", "chr18", "chr19", "chr2", "chr3", "chr4", "chr5", "chr6",
"chr7", "chr8", "chr9", "chrX"), class = "factor"), start = c(5291000L,
10988025L, 11767950L, 11840900L, 12267450L, 12276675L), end = c(5291926L,
10988526L, 11768676L, 11841851L, 12268076L, 12277051L), peak = c(8L,
7L, 8L, 8L, 12L, 7L)), .Nam...
2012 Jun 21
2
Simple Question?
...t I can't figure it out.
I'm trying to make a fairly simple figure, but also trying to make it look
"better" using ggplot2.
I have data.frame that contains
chrom length
1 chr1 249250621
2 chr2 243199373
3 chr3 198022430
4 chr4 191154276
5 chr5 180915260
6 chr6 171115067
7 chr7 159138663
8 chrX 155270560
9 chr8 146364022
10 chr9 141213431
11 chr10 135534747
12 chr11 135006516
13 chr12 133851895
14 chr13 115169878
15 chr14 107349540
16 chr15 102531392
17 chr16 90354753
18 chr17 81195210
19 chr18 78077248
20 chr20 63025520
21 chrY...
2011 Apr 15
1
Whole genome searching of 100bp "D" sequence
...free sequence
query.plus <-
DNAString("DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD") #
60bp C free sequence
query.minus <- reverseComplement(query.plus)
chrList <- c("chr1", "chr2", "chr3", "chr4", "chr5", "chr6", "chr7", "chr8",
"chr9", "chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16",
"chr17", "chr18", "chr19", "chr20", "chr21", "chr2...