Displaying 5 results from an estimated 5 matches for "chr5".
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2011 Oct 19
1
replacing percentage of values in data frame
...##############example data##############
> data
V1 V2 V3 V4 V5 V6 V7
1 chr1 500 500 CHH 0 0.5 +
2 chr1 550 550 CHH 0 0.0 +
3 chr2 700 700 CHH 0 0.0 +
4 chr2 1000 1000 CHH 0 0.0 +
5 chr3 100 100 CHH 0 0.0 +
6 chr4 450 450 CG 0 0.0 +
7 chr5 450 450 CHH 0 0.0 +
8 chr5 50034 50034 CHG 0 0.0 +
9 chr7 50055 50055 CHG 0 0.0 +
10 chr10 50063 50063 CHH 0 0.0 +
> dput(data)
structure(list(V1 = structure(c(1L, 1L, 3L, 3L, 4L, 5L, 6L, 6L,
7L, 2L), .Label = c("chr1", "chr10", "chr2", "chr3&...
2012 Sep 15
2
qplot: plotting precipitation data
...3L, 3L, 3L, 3L, 3L), .Label =
c("chr1",
"chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16",
"chr17", "chr18", "chr19", "chr2", "chr3", "chr4", "chr5", "chr6",
"chr7", "chr8", "chr9", "chrX"), class = "factor"), start = c(5291000L,
10988025L, 11767950L, 11840900L, 12267450L, 12276675L), end = c(5291926L,
10988526L, 11768676L, 11841851L, 12268076L, 12277051L), peak = c(8L,
7L, 8L, 8...
2010 Nov 07
1
How do I order xyplot line points?
...yplot figure:
http://img577.imageshack.us/img577/686/filesizeresults12000000.png
The data are organized in a matrix file as follows:
Type Elements Chromosome Time
bedGz 12000000 chr1 14.240
bedGz 12000000 chr2 7.949
bedGz 12000000 chr3 5.103
bedGz 12000000 chr4 5.290
bedGz 12000000 chr5 5.161
...
The x-axis labels in the Chromosome column are ordered lexicographically in my figure ( chr1 > chr10 > chr11 > ... ) ? this is correct.
However, the code I use to draw lines between points in the xyplot connects points in numerical order ( chr1 > chr2 > ... ) ? this is...
2012 Jun 21
2
Simple Question?
...emely frustrated that I can't figure it out.
I'm trying to make a fairly simple figure, but also trying to make it look
"better" using ggplot2.
I have data.frame that contains
chrom length
1 chr1 249250621
2 chr2 243199373
3 chr3 198022430
4 chr4 191154276
5 chr5 180915260
6 chr6 171115067
7 chr7 159138663
8 chrX 155270560
9 chr8 146364022
10 chr9 141213431
11 chr10 135534747
12 chr11 135006516
13 chr12 133851895
14 chr13 115169878
15 chr14 107349540
16 chr15 102531392
17 chr16 90354753
18 chr17 81195210
19 chr18 78077248
20 chr20...
2011 Apr 15
1
Whole genome searching of 100bp "D" sequence
...")
# 100bp C free sequence
query.plus <-
DNAString("DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD") #
60bp C free sequence
query.minus <- reverseComplement(query.plus)
chrList <- c("chr1", "chr2", "chr3", "chr4", "chr5", "chr6", "chr7", "chr8",
"chr9", "chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16",
"chr17", "chr18", "chr19", "chr20", "chr21...