search for: biopython

Hi I am trying to read genbank est flat files. Is there any function in R to do that. I was looking for something similar to SeqIO.parse(input_handle, "genbank") in bioPython that convert the genebank sequence into fasta sequence. (One option is to call biopython from R but I am not familiar with python functions so I want to avoid that and I am keeping it as last resort) Thanks and regards. --Fahim -- Fahim Mohammad Bioinforformatics Lab University of Louisville Lo...

...plicant would be expected to effectively interact with various subject matter experts in molecular biology, food safety, epidemiology, and other disciplines as program needs require. The applicant should be proficient in many of the standard programming languages and tool sets of relevance (Python, BioPython, R, Blast, NGS tools, ...). In addition, the applicant should be comfortable working with a wide variety of structured and unstuctured types of data, including geospatial, next generation sequencing, and social text data. Knowledge of standard software engineering best-practices, database design, a...

Hi all, I'm new to Centos, just moved here from Gentoo Linux. I have to install a server for bioinformatics purposes and I see that default yum repositories do not include any bioinformatics software (i.e. ncbi-toolkit, blat, and others). I'm googling a bit but I can't find a valuable solution: which is (or which are) the best repository I should add to have a satisfying list

...or [ not counting a handful of windows-only CRAN packages ] ), ESS editing in Emacs/XEmacs, GGobi visualization, Rpad webinterface, and initial support for the RKward GUI; - even stronger bioinformatics/biology support than before: BioConductor, arb, biofox, bioperl, biopython, blast2, boxshade, bugsx, clustalw, fastdnaml, fastlink, garlic, gromacs, hmmer, loki, mipe, molphy, muscle, ncbi, phylip, rasmol, readseq, seaview, t-coffee, textopo, and more; - continued strong mathematics / computational algrebra support: axiom, blacs, cal...

...or [ not counting a handful of windows-only CRAN packages ] ), ESS editing in Emacs/XEmacs, GGobi visualization, Rpad webinterface, and initial support for the RKward GUI; - even stronger bioinformatics/biology support than before: BioConductor, arb, biofox, bioperl, biopython, blast2, boxshade, bugsx, clustalw, fastdnaml, fastlink, garlic, gromacs, hmmer, loki, mipe, molphy, muscle, ncbi, phylip, rasmol, readseq, seaview, t-coffee, textopo, and more; - continued strong mathematics / computational algrebra support: axiom, blacs, cal...

...iting in Emacs / XEmacs, GGobi visualization, Rpad webinterface, the award winning JGR 'Java GUI for R', RSPerl, Rserve, an early release of the RKward GUI and more. - continued strong bioinformatics/biology support: BioConductor, arb, biofox, bioperl, biopython, blast2, boxshade, bugsx, clustalw, fastdnaml, fastlink, garlic, gromacs, hmmer, loki, mipe, molphy, muscle, ncbi, phylip, rasmol, readseq, seaview, t-coffee, textopo, ImageJ, and more; - continued strong mathematics / computational algrebra support: axiom, bl...

...iting in Emacs / XEmacs, GGobi visualization, Rpad webinterface, the award winning JGR 'Java GUI for R', RSPerl, Rserve, an early release of the RKward GUI and more. - continued strong bioinformatics/biology support: BioConductor, arb, biofox, bioperl, biopython, blast2, boxshade, bugsx, clustalw, fastdnaml, fastlink, garlic, gromacs, hmmer, loki, mipe, molphy, muscle, ncbi, phylip, rasmol, readseq, seaview, t-coffee, textopo, ImageJ, and more; - continued strong mathematics / computational algrebra support: axiom, bl...

...er 585281 ! Bug #585281 [python3.1-examples] python3.1-examples: Python string exceptions no more allowed in Python 2.6 Changed Bug submitter to 'Sandro Tosi <morph at debian.org>' from 'Sandro Tosi <morph at ravel.debian.org>' > submitter 585282 ! Bug #585282 [python-biopython] python-biopython: Python string exceptions no more allowed in Python 2.6 Changed Bug submitter to 'Sandro Tosi <morph at debian.org>' from 'Sandro Tosi <morph at ravel.debian.org>' > submitter 585283 ! Bug #585283 [python-bluez] python-bluez: Python string exceptions...