Displaying 3 results from an estimated 3 matches for "biocinstallpkggroups".
2010 Jul 08
2
package installation for Windows 7
...11'
Error in if (ok) { : missing value where TRUE/FALSE needed
> source("http://bioconductor.org/biocLite.R")
BioC_mirror = http://www.bioconductor.org
Change using chooseBioCmirror().
Warning messages:
1: In safeSource() : Redefining ?biocinstall?
2: In safeSource() : Redefining ?biocinstallPkgGroups?
3: In safeSource() : Redefining ?biocinstallRepos?
> biocLite()
Using R version 2.11.1, biocinstall version 2.6.7.
Installing Bioconductor version 2.6 packages:
[1] "affy" "affydata" "affyPLM" "affyQCReport"
[5] "annaffy" "annotate" &...
2009 Jun 23
1
Cannot install pakages from Bioconductor besides the default installation
...ackages. So I tried biomaRt as follows.
It does not get installed correctly.
Please see the following sequence.
Thank you in advance.
Maura
> source("http://bioconductor.org/biocLite.R")
Warning messages:
1: In safeSource() : Redefining ‘biocinstall’
2: In safeSource() : Redefining ‘biocinstallPkgGroups’
3: In safeSource() : Redefining ‘biocinstallRepos’
> > biocLite("biomaRt")
Running biocinstall version 2.4.11 with R version 2.9.0
Your version of R requires version 2.4 of Bioconductor.
Warning in install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies, :
argu...
2010 Sep 04
1
non-zero exit status error when install GenomeGraphs
...ls datasets methods base
loaded via a namespace (and not attached):
[1] tools_2.10.1
> source("http://bioconductor.org/biocLite.R")
biocLite("GenomeGraphs")Warning messages:
1: In safeSource() : Redefining 'biocinstall'
2: In safeSource() : Redefining 'biocinstallPkgGroups'
3: In safeSource() : Redefining 'biocinstallRepos'
> biocLite("GenomeGraphs")
Using R version 2.10.1, biocinstall version 2.5.11.
Installing Bioconductor version 2.5 packages:
[1] "GenomeGraphs"
Please wait...
Warning in install.packages(pkgs = pkgs, repos =...