search for: bcdist

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2011 Oct 04
2
Adonis and nmds help and questions for a novice.
...y(ecodist) library(MASS) mydata <- read.table("ash_data.csv", header=TRUE, sep=",", row.names="Site") envdata_fit <- read.table("ash_env.csv", header=TRUE, sep=",", row.names="Site") #distance matrix of samples using bray curtis d= bcdist(mydata, rmzero=FALSE) And then using the distance matrix from this to use for adoins? Is this correct. With this I have then run Adonis results = adonis(d ~ wood, envdata_fit, permutations = 1000) and get significant values to see if sig diff in diversity between wood and grass habitat. Howeve...