Displaying 6 results from an estimated 6 matches for "bayesfactor".
2012 Nov 21
1
paths and Rook problems only in OSX CRAN binary package?
...d the page loads in the browser.
However, if I've installed it from CRAN, I get the following error when
trying to open my Rook interface:
######
Warning message:
In normalizePath(file.path(root, path_info)) :
path[1]="/Volumes/XT3/Rdev-web/QA/Simon/packages/leopard-universal/Rlib/2.15/BayesFactor/.//www/warning.html":
No such file or directory
######
I assume "Simon" refers to Simon Urbanek.
www/warning.html is the file Rook is attempting to open. This looks like
a path from the CRAN build machine. How did this make it into my
package? I'm sort of baffled, and I don...
2012 Oct 14
2
problem with OSX binary package build?
I noticed that my package BayesFactor
(http://cran.r-project.org/web/packages/BayesFactor/index.html) is not
available on Mac OS, and the note says to see the check log. The only
issue in the check log is a note:
checking R code for possible problems ... NOTE
all.Nways.env.mc : <local>: no visible binding for global variable...
2009 Jul 02
0
MCMCpack: Selecting a better model using BayesFactor
...0, d0=4500000,
marginal.likelihood="Chib95", mcmc=50000)
model3 <- MCMCregress(bwt~as.factor(race) + smoke + ht,
data=birthwt,
b0=c(2700, -500, -500, -500, -500),
B0=c(1e-6, 1.6e-5, 1.6e-5, 1.6e-5,
1.6e-5), c0=10, d0=4500000,
marginal.likelihood="Chib95", mcmc=50000)
BF <- BayesFactor(model1, model2, model3)
BF
PostProbMod(BF)
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2013 Apr 01
1
missing exported methods when compiling vignettes in R 3.0.0 RC
A new problem has cropped up with compiling vignettes for my package BayesFactor. I'm not sure when it started, but I can tell you it didn't occur on R 2.15.3, and it does on 3.0.0 RC (2013-03-31 r62463) (session info is at the bottom of this message).
I have defined methods for which.min and which.max for a class (I've defined both S3 and S4 methods for the class...
2006 Oct 30
1
as.zoo question
...ow ( again you would need the zoo and chron
libraries to be installed ),
you should get the error
"Error in Ops.POSIXt(frequency, freq) : %% not defined for "POSIXt"
objects".
What I want to do is take the numeric vector, lt, and turn it into a
zoo object using
the index of bayesfactor ? but i think i am doing something wrong.
maybe as.zoo expects something else other than a vector or maybe the
elements of lt
need to be unique ? it doesn't sound like lack of uniqueness is the
problem
form the error. thanks to anyone who would bother to paste the code or
could
tell me the...
2017 Jul 06
0
Bayes Factor
...- as.factor(competition$clipping)
competition$biomass <- as.numeric(competition$biomass)
str(competition)
#
tapply(competition$biomass, competition$clipping, mean)
tapply(competition$biomass, competition$clipping, sd)
# Bayesian Procedure for ANOVA
# Calculate Bayes Factors
library(BayesFactor)
competitionBayesOut <- anovaBF(biomass ~ clipping, data = competition)
# Run mcmc iterations
mcmcOut2 <- posterior(competitionBayesOut, iterations = 10000)
# boxplot of the posteriors for the groups
boxplot(as.matrix(mcmcOut2[,2:6]))
# Show the HDIs
summary(mcmcOut2)
# Calculate the...