search for: b876

...it seems that with this new system2(), the arguments to the system command need to be passed separately thru the 'args' argument. Cheers, H. -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319

...urrent R devel. The "multi-assign" mode (i.e. when the 'envir' arg is supplied) doesn't seem to have this problem. Cheers, H. -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319

...aining an ?NaN? is ?NaN?, except that the min/max of any vector containing an ?NA? is ?NA? even if it also contains an ?NaN?. Cheers, H. -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319

...10-10 22:15 BUS/src/BUS.o Packages with a Makefile in src/ don't seem to be affected. This is with R 2.12.0 RC (2010-10-07 r53227). Thanks, H. -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319

...length of the longest: > substring("abcd", first=1:3, last=4:3) [1] "abcd" "bc" "cd" Cheers, H. -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319

...ched base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_2.12.0 -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319

...TEXINPUTS')" | R Fatal error: you must specify '--save', '--no-save' or '--vanilla' What about --slave? Thanks! -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319

...nt across utils::untar(), utils::tar() and tools:::.build_packages() (only the first doesn't put them) but that's another story. Thanks! H. -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319

...Rver <- strsplit(strsplit(desc["Built"], ";")[[1L]][1L], "[ \t]+")[[1L]][2L] Thanks, H. -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319

Rgraphviz I cannot load it I have re-installed etc etc etc etc And cannot load it Message is 6): Library not loaded: /usr/local/lib/libgvc.3.dylib Referenced from: /Library/Frameworks/R.framework/Versions/2.6/Resources/library/Rgraphviz/lib s/ppc/Rgraphviz.so Reason: image not found Error : .onLoad failed in ''loadNamespace'' for ''Rgraphviz'' Error:

..., *any* value > 1024 seems to fix the problem (even though the long HELLO message above is 1091 bytes). Any idea what's going on? Thanks, H. -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319

...gt;> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M2-B876 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpages@fhcrc.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > [[alternative HTML version deleted]]

...PHONE=C;LC_MEASUREMENT=en_CA.UTF-8;LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319

hello! my question conserns with use of "panel" package (written by R.C.Gentlman) (unfortunately the manual and help sites are very short) 1. is it possible to do analysis just without a(ny) covariate? i suggest do it by introducing a covariate with level=0 in all obervations, this because of Q(z)=Q_o exp(beta*z), but it seemingly doesn't work 2. in the option gamma in the

Dear R Users, I am looking clique a graph technique, to identify the values from the dataset. I tried with help.search("graph") it show's the graphics related stuff Is there any package that i can use to find Clique in a dataset? Thanks in Advance JJ -- Lecturer J. Joshua Thomas KDU College Penang Campus Research Student, University Sains Malaysia [[alternative

Hi all. How do I extract date from fcs format file with R. I.e I'd like make statistical analysis using R-program, but I don't know if there are R-packets for fcs format file, and using examples. Thanks. Pta: In Linux SO exist any program that transform from fcs format to ASCII text file?

I'm an Rgraphviz newbie trying to figure out how to do some things/whether they are possible. Apparently graphviz does allow you to modify line widths of edges: see https://mailman.research.att.com/pipermail/graphviz-interest/2001q2/000051.html (although it looks a little obscure even in graphviz). [As discussed in the thread above, the "weight" parameter in Rgraphviz sets the

...he posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > > -- Florian Hahne, PhD Computational Biology Program Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 PO Box 19024 Seattle, Washington 98109-1024 206-667-3148 fhahne at fhcrc.org

Hello, Does anyone know of a way of finding all the nodes that are between a pair of specified nodes in the excellent graph package (R vers 2.5.0). I have a class(graphAM) object and need to determine all possible pathways in this object. Here's an example: In the simple case of a--b--c (where -- denotes "conected to") the list of all pathways would be: ab ba abc cba cb bc.

Hi All, does anyone know how to import binary .bed files generated by Plink (http://pngu.mgh.harvard.edu/~purcell/plink/ ) into R? the Plink FAQ explains how to conver other types of files, not the .bed. Cheers, Federico -- Federico C. F. Calboli Department of Epidemiology and Public Health Imperial College, St. Mary's Campus Norfolk Place, London W2 1PG Tel +44 (0)20 75941602 Fax