search for: b876

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2010 Oct 02
1
cleanup_pkg() in tools:::.build_packages() is broken
...it seems that with this new system2(), the arguments to the system command need to be passed separately thru the 'args' argument. Cheers, H. -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
2010 Oct 29
1
list2env() is broken
...urrent R devel. The "multi-assign" mode (i.e. when the 'envir' arg is supplied) doesn't seem to have this problem. Cheers, H. -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
2011 Feb 24
1
min/max of a vector with NAs and NaNs
...aining an ?NaN? is ?NaN?, except that the min/max of any vector containing an ?NA? is ?NA? even if it also contains an ?NaN?. Cheers, H. -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
2010 Oct 11
1
'R CMD build' not cleaning the src/ folder on Windows
...10-10 22:15 BUS/src/BUS.o Packages with a Makefile in src/ don't seem to be affected. This is with R 2.12.0 RC (2010-10-07 r53227). Thanks, H. -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
2010 Jun 04
2
Argument recycling in substring()
...length of the longest: > substring("abcd", first=1:3, last=4:3) [1] "abcd" "bc" "cd" Cheers, H. -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
2011 Feb 23
1
factor() on a double vector
...ched base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_2.12.0 -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
2010 Sep 16
1
Lack of consistent cross-platform behaviour of tools:::buildVignettes()
...TEXINPUTS')" | R Fatal error: you must specify '--save', '--no-save' or '--vanilla' What about --slave? Thanks! -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
2010 Sep 30
1
tar problem when using 'R CMD build' on Windows
...nt across utils::untar(), utils::tar() and tools:::.build_packages() (only the first doesn't put them) but that's another story. Thanks! H. -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
2010 Nov 10
1
installed.packages Error: subscript out of bounds
...Rver <- strsplit(strsplit(desc["Built"], ";")[[1L]][1L], "[ \t]+")[[1L]][2L] Thanks, H. -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
2007 Nov 16
3
Rgraphviz
Rgraphviz I cannot load it I have re-installed etc etc etc etc And cannot load it Message is 6): Library not loaded: /usr/local/lib/libgvc.3.dylib Referenced from: /Library/Frameworks/R.framework/Versions/2.6/Resources/library/Rgraphviz/lib s/ppc/Rgraphviz.so Reason: image not found Error : .onLoad failed in ''loadNamespace'' for ''Rgraphviz'' Error:
2010 Oct 22
1
cannot connect to an FTP server with long HELLO message
..., *any* value > 1024 seems to fix the problem (even though the long HELLO message above is 1091 bytes). Any idea what's going on? Thanks, H. -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
2008 Dec 01
2
[BioC] BioC 2.3 standard installation
...gt;> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M2-B876 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpages@fhcrc.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > [[alternative HTML version deleted]]
2009 Jun 02
2
formal argument "envir" matched by multiple actual arguments
...PHONE=C;LC_MEASUREMENT=en_CA.UTF-8;LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
2006 Jun 09
1
deal with R.package panel
hello! my question conserns with use of "panel" package (written by R.C.Gentlman) (unfortunately the manual and help sites are very short) 1. is it possible to do analysis just without a(ny) covariate? i suggest do it by introducing a covariate with level=0 in all obervations, this because of Q(z)=Q_o exp(beta*z), but it seemingly doesn't work 2. in the option gamma in the
2006 Aug 21
1
Clique technique-Package
Dear R Users, I am looking clique a graph technique, to identify the values from the dataset. I tried with help.search("graph") it show's the graphics related stuff Is there any package that i can use to find Clique in a dataset? Thanks in Advance JJ -- Lecturer J. Joshua Thomas KDU College Penang Campus Research Student, University Sains Malaysia [[alternative
2007 Jul 13
2
Flow Cytometry Standard, fcs format in R.
Hi all. How do I extract date from fcs format file with R. I.e I'd like make statistical analysis using R-program, but I don't know if there are R-packets for fcs format file, and using examples. Thanks. Pta: In Linux SO exist any program that transform from fcs format to ASCII text file?
2007 Oct 04
1
linewidth in Rgraphviz
I'm an Rgraphviz newbie trying to figure out how to do some things/whether they are possible. Apparently graphviz does allow you to modify line widths of edges: see https://mailman.research.att.com/pipermail/graphviz-interest/2001q2/000051.html (although it looks a little obscure even in graphviz). [As discussed in the thread above, the "weight" parameter in Rgraphviz sets the
2008 Feb 12
0
[Fwd: Re: controlling the edge linewidth in Rgraphviz]
...he posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > > -- Florian Hahne, PhD Computational Biology Program Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 PO Box 19024 Seattle, Washington 98109-1024 206-667-3148 fhahne at fhcrc.org
2008 Apr 17
1
Finding a path using the Graph package
Hello, Does anyone know of a way of finding all the nodes that are between a pair of specified nodes in the excellent graph package (R vers 2.5.0). I have a class(graphAM) object and need to determine all possible pathways in this object. Here's an example: In the simple case of a--b--c (where -- denotes "conected to") the list of all pathways would be: ab ba abc cba cb bc.
2008 Jul 25
1
Plink bed files
Hi All, does anyone know how to import binary .bed files generated by Plink (http://pngu.mgh.harvard.edu/~purcell/plink/ ) into R? the Plink FAQ explains how to conver other types of files, not the .bed. Cheers, Federico -- Federico C. F. Calboli Department of Epidemiology and Public Health Imperial College, St. Mary's Campus Norfolk Place, London W2 1PG Tel +44 (0)20 75941602 Fax