search for: annotationtool

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2008 Mar 08
1
Errors in in my code
...g fine. I was able to find gene annotation. somehow, today, when i try to run it again, it is giving me errors message that i don't understand. It says that it cannot open file. what file is it looking for? ###################################################### ##make sure to install and load annotationtool in R annotation_HGU133Plus2 <- read.csv("c://affymetrix.csv", colClasses = "character") annotation_probesets <- scan('c://ttest.csv',skip=1,what='') dataDirectory <- system.file("data", package = "annotationTools") annotation_stuff &l...
2007 Oct 30
6
trouble installing building packages from source using R 2.6.0 on Ubuntu Gutsy AMD64
I have recently upgraded to Ubuntu Gutsy and, for the first time, am using a 64-bit installation. After failing miserably to install R from source, not a problem for me in the past with a 32-bit install, I went the route of using the Debian Etch build. This went smoothly, but I am unable to update my numerous R and BioConductor packages, getting non-zero exit status errors on each package. Is